Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03474 CGGCATGGGGCGATGAGGAGAAGACCATGGTGGGGGCGGTTCTAGGTGGGCGAGCGTTGGAGTTTCTAATGACAAACTCAGTGGCCAACGAGAGTGTGTTAATGGCTGTGGGGAGCGAAGAGGGGTTGCAGAACAAGTTATCGGATCTGGTGGAGCGTCCCAACGTGTCCAATTTCAGTTGGAACTACGCTATTTTCTGGCAGCTCTCACAGTCGAGATCCGGTGACTGGGTTCTGGGTTGGGGAGACGGCTGCTGCAGGGAACCCAACGAGGAAGAACAGGCTGCGCTGAGAGGAACGCTGAGGCTTCTTCGCGTCGACCAGGAGATGCAGCAGAGGATGAGAAAGAGGGTGCTGCAGAAGCTTCACACTACCTTTGGTGGTTCCGACGAGGACAATTACGCTTTTGGCCTTGACCATGTTACCGACACCGAGATGTTTTTTCTTGCTTCCATGTACTTTTCTTTCCCCCGCGGCCATGGTGGCCCTGGTAAGTGCTTCGCCTCCGGCAAACATTTGTGGCTCAAATCTGTCTCTGTCTCTGACTACTGCGTCCGTTCTTCCTTGGCTAAGTCTGCCGGAATTCAGACTGTTGTTTTGGTCCCTACTGATTTGGGAGTCCTTGAGTTGGGTTCTGTCAGAATGTTACCCGAAAGTTTTGAGCTCCTGCAGGCTGTTAAATCCGTCTTTTCCACGCACTCTTCTTCTCATCCTGGGGTAAACGTTAGCACCGGTGGGAATGTGGTTTTTACTGGTTTGGCTATTGGAGATGGTAATAAGCTTGATGGAGCAGCTTCGATTCCCAAGGTTTTTGTCAACACTATTGGCAATCGGACACATTTCAGAGAGAAACTTGCTGTTAGAAAAATGGAGGATAACAGGCCTTGGGCAGGCCATGGCCATGGCCATGGCTACCCCAATGGGAGCAACAACTTTCCAAATGGACGGAATGGTGGGCTTCATGTTTCGAGTTGGGCAGGTGCGAGGCAGCCTGGTCCTGTTGAGATTTTTGCTCCAAGGGCATCCACCAGCGGTGTCGTTTCTGCCGAGCTTGCTGCTAATGGTGTGAAACAGGACTTGATGCTTGGCAATAGCTATCAACCTCTAAGGCAGGTGCAAATGCAAATTGACTTTACTGGGGCCACTTCAAAGCCTTCTTCTGTGAGACCGGTTGTTGGTGAATCTGAGCTTTCTGATATTGAGGCCTCTTGCAAGGAGGAGCAACCGAATGTTGCTGATGAAAGGAAGCCAAGGAAGCGGGGTAGGAAGCCTGCTAATGGAAGGGAAGAGCCCCTCAATCATGTCGAGGCTGAGAGGCAAAGGCGCGAGAAGCTCAACCAGCGCTTCTATGCTTTAAGATCTGTGGTGCCTAATATCTCCAAGATGGACAAGGCTTCCTTGTTAGGGGATGCCATTGCTTACATCAATGAGCTTCAGGCTAAAGTCAAGATCATGGAGGCCGAAAGAGAGAGATTTGGAAGCACTTCAAAAGATGGATCGATTTTGGAAGCCAACTCAAGATCAGAAAATCAGGAGAAAGAAGCTCCTGATGTGGATATTCAAGCTGTTCAAGACGAGGTGATTGTAAGGGTGAGCTGCCCTCTGGATGCTCACCCTGCTTCAAAAGTAATTCAAACACTCAAAGAGGCACAAATTGGAGTTGTAGAATCTAAACTTGCTGCAGCAAATGATACTATTTTCCACACATTTATTATTAAGTCCCAAGGATCTGAACAGCTCACAAAGGACAAGTTGATTGCTGCATTTTCCCCCACAGAATCCAACTCATTGCAGCCGTTTAGCAAGGTGTTTTTACCCCGCTTGTTGCTTTCAAATTTCAAGCGTACTTATTTGGAGTTTTGGTTTTATGCGGTTTCGTGGATAGAGTTGTCTGTCTCGTGTATGCAATCTGCACGAGGACTAAGAAATAGGAAATTGGAAAATGTACAAATCTGCAAAGTGTTAAGTGGATGGTATTATCTGGTTAATTTCTTTCTGTTATTATGTTTCCTTGACCCTTCGCTTTATCAGCAAACAAGTCAGGCCGAATCTTTGATGCACATGAAAAGGAAGAAAAGTATTGGTACTGCACTTAAATTCTTGACCGTTCCTTTGTTATTACCACCTTTCTATGAGAAATTGAGGTATCTC 2150 0.4753 MVGAVLGGRALEFLMTNSVANESVLMAVGSEEGLQNKLSDLVERPNVSNFSWNYAIFWQLSQSRSGDWVLGWGDGCCREPNEEEQAALRGTLRLLRVDQEMQQRMRKRVLQKLHTTFGGSDEDNYAFGLDHVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWLKSVSVSDYCVRSSLAKSAGIQTVVLVPTDLGVLELGSVRMLPESFELLQAVKSVFSTHSSSHPGVNVSTGGNVVFTGLAIGDGNKLDGAASIPKVFVNTIGNRTHFREKLAVRKMEDNRPWAGHGHGHGYPNGSNNFPNGRNGGLHVSSWAGARQPGPVEIFAPRASTSGVVSAELAANGVKQDLMLGNSYQPLRQVQMQIDFTGATSKPSSVRPVVGESELSDIEASCKEEQPNVADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKVKIMEAERERFGSTSKDGSILEANSRSENQEKEAPDVDIQAVQDEVIVRVSCPLDAHPASKVIQTLKEAQIGVVESKLAAANDTIFHTFIIKSQGSEQLTKDKLIAAFSPTESNSLQPFSKVFLPRLLLSNFKRTYLEFWFYAVSWIELSVSCMQSARGLRNRKLENVQICKVLSGWYYLVNFFLLLCFLDPSLYQQTSQAESLMHMKRKKSIGTALKFLTVPLLLPPFYEKLRYL 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03474 708 MobiDBLite consensus disorder prediction 372 431 - -
Pste5g03474 708 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 419 483 IPR036638 GO:0046983
Pste5g03474 708 FunFam Transcription factor bHLH13 413 487 - -
Pste5g03474 708 Coils Coil 466 486 - -
Pste5g03474 708 CDD bHLH_AtAIB_like 417 482 - -
Pste5g03474 708 SMART finulus 426 475 IPR011598 GO:0046983
Pste5g03474 708 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 34 221 IPR025610 -
Pste5g03474 708 MobiDBLite consensus disorder prediction 484 508 - -
Pste5g03474 708 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 420 469 IPR011598 GO:0046983
Pste5g03474 708 PANTHER MYC 23 579 IPR045084 GO:0003700|GO:0006355
Pste5g03474 708 Pfam Helix-loop-helix DNA-binding domain 424 470 IPR011598 GO:0046983
Pste5g03474 708 Gene3D - 413 485 IPR036638 GO:0046983
Pste5g03474 708 MobiDBLite consensus disorder prediction 390 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03474 Pste-Chr5 28196501 28199193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03474 1 589 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.275 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g03474 bHLH-MYC_N 6e-54 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03474 5 28196501 28199193 Pste6g01763 6 8010750 8012456 PCT