Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03467 ATGGAGTCACCGCCGAGTAACCACCACGCCGTCGACGGCGAAGCCATCGACGTTCGGCCCTTTTCTCACAGAGACGACGACGACGACAAGCCCCAACCGCTCACCGGCGACGGCGCTAGCCCCGGAAAGATATTTATCGGCGGTTTAGCGAGAGAAACCACGATTGCACAATTTATCAAGCATTTTGGTAAATACGGTGAGATAACGGATTCCGTTATCATGAAGGACCGGAAGACCGGGCAGCCACGTGGGTTTGGCTTCATAACGGGGGCTGTTGGGTCAAATTCAAAGGACTTCCGGACTAAGAAGATTTTTGTTGGTGGAATTCCTTCCACTGTGACTGAAGGGCTAGGAGCTGTTAAAGGTTTTACTGATGAATTTAGGGACTTCTTTACGCGCTATGGTGAAGTTAAAGATCACCAAATCATGAGGGACCATTCTACTAATCGTTCACGTGGCTTTGGGTTTATCACCTATGACTCTGAAGAAGCTGTTGATGATCTCTTAGCTGTGGGGAACAAAATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCAGAACCAAAGAAGCCAAATCCACCAGCCCCATCATCCAAGCGCTATAATGACTCTCGGTCTTCATATGGTAGTGGATATGGTGATGCTTATGAGGGATTTGGTGGTAATTTTGGTATGGGTGGCTATAGGTCAGGTGGTGCCTATGGTGGTAGGGGAAGTGCTTATGGAGGCTTTGGAAATGAGTTTGGTGGGTATGGAGGATATGCTGGTGCCATGGGGCCTTATAGAGGTGATCCTTCACTTGGCTATGCTGGGCGATATGGTGGAAGCTTTGGCAGAGGCTATGATCTTGGTGGGTATGGTGGACCTAATGAGGGTTACGGGGCATATGGTAGTGGTGGTTCCTCTGGTAGTGCCTATGGAAGCAACTACGATGCCAGCATGGGGGGTGGGTATGGGGGTCCCACTGGAGGCTCCTTTTATGGGACTAGAGGGGGATATGGTGGTGCAGGAACTGGTCGATATCATCCTTATGGAAGATAG 1044 0.499 MESPPSNHHAVDGEAIDVRPFSHRDDDDDKPQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITGAVGSNSKDFRTKKIFVGGIPSTVTEGLGAVKGFTDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITYDSEEAVDDLLAVGNKIEFAGAQVEIKKAEPKKPNPPAPSSKRYNDSRSSYGSGYGDAYEGFGGNFGMGGYRSGGAYGGRGSAYGGFGNEFGGYGGYAGAMGPYRGDPSLGYAGRYGGSFGRGYDLGGYGGPNEGYGAYGSGGSSGSAYGSNYDASMGGGYGGPTGGSFYGTRGGYGGAGTGRYHPYGR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03467 347 MobiDBLite consensus disorder prediction 1 42 - -
Pste5g03467 347 MobiDBLite consensus disorder prediction 185 207 - -
Pste5g03467 347 Gene3D - 93 219 IPR012677 -
Pste5g03467 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 89 IPR000504 GO:0003723
Pste5g03467 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 189 IPR000504 GO:0003723
Pste5g03467 347 SUPERFAMILY RNA-binding domain, RBD 98 219 IPR035979 GO:0003676
Pste5g03467 347 SMART rrm1_1 120 185 IPR000504 GO:0003723
Pste5g03467 347 SMART rrm1_1 43 107 IPR000504 GO:0003723
Pste5g03467 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 181 IPR000504 GO:0003723
Pste5g03467 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 89 IPR000504 GO:0003723
Pste5g03467 347 SUPERFAMILY RNA-binding domain, RBD 7 89 IPR035979 GO:0003676
Pste5g03467 347 Gene3D - 39 89 IPR012677 -
Pste5g03467 347 MobiDBLite consensus disorder prediction 12 33 - -
Pste5g03467 347 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 27 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03467 Pste-Chr5 28083631 28087368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03467 38 171 Eukaryotic Initiation Factors Gene Family AT1G71770 26.901 2.35e-07 50.4