Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03466 GATGAGAGCACCCTTAACATTAACAAAAGCTTTCTTTGCCCCTTGATATTGGGTTTTTAATATTTTGTTGCAATGGAAGCAGAAACTCGGCGGAAAATAGAGGAGATGGTGTTGAATGTAGTGAAGAATTCAAACATTGAAAAAGCGACGGAGTTCAGCATCCGAGTGGCTGCCTCGGAGCGGCTGGGCATGGACCTCTCGGAGTCCCCCGCTAGACAGCTTGTGAGAAGCGTCATTGAGTCTTATCTTATCTCCGTTGCGGCCAATGAAATGTCCAAAGACGCAGAGAACAAGAACGCCCAAAACGACGATGTCGTTGCGGCCAACCAACACTTTAGAGACACTGTGGTCGCCAACCTCAAGAGGGACGAATATGGCGAACGCGTTATTTGCCAGCTATCCAACGGGAGGAACGTGGCGGTGAACGATTTCAAAGGAAAAACGATGGTCTCAATTAGGGATTTCTATATGAGAGATGGAAAACTACTTCCCAGTCGTAAAGGTATAAGTTTATCTTCTGAACAATGGTCAACCTTCAAGAAGAGTGTTCCTGCCATAGAGGAAGCTATCACAAAGATGGAGGAAAGGATAAGATTGAAGCCTAAAGATAAGCAAAAGGGAGATGTGTCAAATTCAGTAGTTGATGGTAAGCAAAATGAAGACACGTTAAATTCAGTTGTTGATGATAAGCAAAATAGAGATGTGGCAAATGCAACTGCTGTTGATAGTAAGCAAAATGGAGATGCAACAAATTCAGTAAATTCAGTTGTTGACGTTGCTCCTCTTGAGCCTGTTGTCCCTATTGAGGTCATCCGTTTTGATGGGAAGAATTTCCAGCTCTGGGCTCAGCAGATGGAGTTACTCTTTAAACGATTGAAGATTGAATATGTGCTTATTGAACCATGCCCGAATACTACATTAGGGGAAGGTGCAAAGGCTGAAGGCACTGCTGCAGCCAAGGCTGCAGAAAGGAGATGGTTGAATGATGATTTAATGTGTTGGCGCAACATCTTGAGCCATTTATCTGATCCTCTTTTCAACCTGTATTCAAACAGAAAAATGAGTGGTAAGGAGTTATGGGAAGAGTTAAAACTGCTTTATCTGTATGAGGAATTTGGAACCAAGAGATCTCAAGTGAAAAAGTATATTGAATTTCAGATTGTTGATGATAAAGAAATTATTGAGCAAATCCGAGAATTAAATGACATTGCAGATTCTATTACTGCTGCTGGAATGTTTATTGATGATAACTTTCATGTTAGTGTCATCATCTCAAAGCTTCCACCGTCATGGAAGCACTTCTGCGTGAAGTTAATGTGTGAGGAGTATCTATCATTCCGGAGGTTAATGGAACGTATACAGATAGAGGAAGAATATCGCTATGGAGTAAAACGAGCGGGTGAACATTCTAACAGTATAGGATATCACCAGGGCAATAGAGTTGGACAAAGGAGGGCTGACTATAAGCCACTGGGAATGTATAGGAATAGGTCAGAAATTAATACCAGGAGCGTGTCCTGCAGTATATGTGGCAAAAGAGGTCATCTTTCTCAACATTGCTGGAGAAGATATGACAAACAAACTGATGAGAGGAAAACAGAAGAGAATGTGCGTATACCTAGACAAGTTGATACTCCGGCTGCTTCCTAGTAACTTGTACAAACATGCTTTGTATTTTCAGCCAGAACACACAAAACCTATGCTTATTTTTTTGGGGTACAAGGTCTGATATTTATTTTGCACACAAGTGTCTTTAATTTATAGTAGTTGGTAATACCTTTTTTTTGTCA 1790 0.4112 MEAETRRKIEEMVLNVVKNSNIEKATEFSIRVAASERLGMDLSESPARQLVRSVIESYLISVAANEMSKDAENKNAQNDDVVAANQHFRDTVVANLKRDEYGERVICQLSNGRNVAVNDFKGKTMVSIRDFYMRDGKLLPSRKGISLSSEQWSTFKKSVPAIEEAITKMEERIRLKPKDKQKGDVSNSVVDGKQNEDTLNSVVDDKQNRDVANATAVDSKQNGDATNSVNSVVDVAPLEPVVPIEVIRFDGKNFQLWAQQMELLFKRLKIEYVLIEPCPNTTLGEGAKAEGTAAAKAAERRWLNDDLMCWRNILSHLSDPLFNLYSNRKMSGKELWEELKLLYLYEEFGTKRSQVKKYIEFQIVDDKEIIEQIRELNDIADSITAAGMFIDDNFHVSVIISKLPPSWKHFCVKLMCEEYLSFRRLMERIQIEEEYRYGVKRAGEHSNSIGYHQGNRVGQRRADYKPLGMYRNRSEINTRSVSCSICGKRGHLSQHCWRRYDKQTDERKTEENVRIPRQVDTPAAS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03466 525 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 172 IPR045125 GO:0003713|GO:0060261
Pste5g03466 525 Gene3D - 477 523 - -
Pste5g03466 525 MobiDBLite consensus disorder prediction 176 208 - -
Pste5g03466 525 Gene3D Transcriptional Coactivator Pc4; Chain A 96 174 IPR009044 GO:0003677|GO:0006355
Pste5g03466 525 ProSiteProfiles Zinc finger CCHC-type profile. 483 496 IPR001878 GO:0003676|GO:0008270
Pste5g03466 525 Pfam gag-polypeptide of LTR copia-type 302 435 - -
Pste5g03466 525 Pfam DEK C terminal domain 5 59 IPR014876 -
Pste5g03466 525 SUPERFAMILY ssDNA-binding transcriptional regulator domain 106 168 IPR009044 GO:0003677|GO:0006355
Pste5g03466 525 Pfam Transcriptional Coactivator p15 (PC4) 107 157 IPR003173 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03466 Pste-Chr5 28082185 28086032 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Pste5g03466 Retrotran_gag_2 6.9e-15 CL0523