Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03460 CTCCAACCTCTAAGTTATTCTCCTCTCCTCCATGTCGATCTCTTTTCGGACAGTCCTGAAAATCCTTTGATTTTAATCAAAGGGTCCTTAGGATTCGGACACCTATATCTCGTATCACTCCTCTAGTTGTCTTCGAAGACCAAGGAAAGGAAAGCATTAATTTTTGCCCCTTTTCTTACAAAAACAACACGACCACCCAGCTGCTGAAGCTGAAGCGTCGCAACTCACATATGATTCGAGTAGCCACAAATTAAGCGTGTTGCTGTTGGTGTTATGAGTGATAGAATGGAATCGAGTAGCATTGAGAGCAGCACTGTGTCATCCATGACTATGATGGAAGAGGATGAGCATCCGCATCACTTTTCTTCAATATCCAAGCTTCATAACAATGGCCCCACCACTACCAGTGTCCATGACCTTCTTGAATGCCCCGTCTGCACCAACTCTATGTACCCTCCTATCCATCAGAGTATATTGAAACCTTTCTGTCTATGTCCTTGTACAGGAATACAGTGTCACAATGGGCACACACTTTGTTCAACTTGCAAGACAAGGGTACACAACCGATGTCCAACCTGCAGGCAGGAACTGGGTGATATAAGGTGTTTGGCATTAGAGAAGATAGCAGAATCACTTGAACTGCCTTGCAGATACATCTCTCTTGGGTGTCCTGAGATATTTCCCTATTACAGCAAACTCAAACATGAGGCTGTTTGTAACTTCAGACCATACAACTGCCCTTACGCTGGGTCAGACTGCTCAGTGGTTGGGGATATTCCATGCCTTGTCGCTCATCTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCTACATGGATGTTAACGGTTTTCCACTGTTTTGGTCAGTATTTTTGCCTCCATTTTGAGGCATTCCAGCTTGGCATGGCTCCTGTTTACATGGCATTCCTTCGATTCATGGGTGACGAAAGAGAGGCCAGGAACTACAGCTACAGCCTAGAGGTGGGAGGAAATGGACGTAAACTAACTTTTGAGGGGAGTCCAAGAAGCATTAGGGATAGCCATAAGAAAGTCAGAGACAGTCATGACGGTCTCATCATTTACCGCAACATGGCACTTTTCTTCTCAGGTGGAGACAGGAAAGAGTTGAAGCTACGAGTAACTGGAAGGATATGGAAAGAACAGCAAAACCCCGATGGTGGAGTGTGCATACCCAACCTGTGTAGCTAGGTTGCTTGCATATTCTCTAGAGTGCTATATCTTGCTGTAGATAACTTGAAAAATCATAATCTTTGACTGGGGAATGGTTATGGGGATTTCAACTTCAAACAATAAAAAAAAAAACTGAGTTCTAACCACAGATGCTATGTCAAATATTTGGTCTCGTACGTGTATCATATGCTAAATCAGTCGAGATTCTCAAAAAATATTTAAAGGGTTGTTACTTTTCCAC 1486 0.4334 MSDRMESSSIESSTVSSMTMMEEDEHPHHFSSISKLHNNGPTTTSVHDLLECPVCTNSMYPPIHQSILKPFCLCPCTGIQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSDCSVVGDIPCLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03460 329 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 182 308 IPR008974 GO:0005515
Pste5g03460 329 MobiDBLite consensus disorder prediction 1 20 - -
Pste5g03460 329 FunFam E3 ubiquitin-protein ligase SINAT5-like 176 308 - -
Pste5g03460 329 CDD Sina 181 309 - -
Pste5g03460 329 SUPERFAMILY TRAF domain-like 120 312 - -
Pste5g03460 329 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 26 314 - -
Pste5g03460 329 MobiDBLite consensus disorder prediction 1 39 - -
Pste5g03460 329 CDD RING-HC_SIAHs 50 103 - -
Pste5g03460 329 Pfam Seven in absentia protein family 109 308 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pste5g03460 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 175 IPR013083 -
Pste5g03460 329 ProSiteProfiles Zinc finger SIAH-type profile. 120 180 IPR013010 GO:0008270
Pste5g03460 329 FunFam E3 ubiquitin-protein ligase SINAT3 117 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03460 Pste-Chr5 28017721 28021595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03460 1 315 C3H Transcription Factor Family AT2G41980 67.508 1.25e-156 439