Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03453 GCAGTTTTGTTTTCCTCAAAACCAATGGACACCTTGAAGGTCCTCTTCCACATCCTCATTTTTTTTTCTGTCACATATGCCTTAGATGATTGTCGATATTATTCTTGGTGCAGCGACAACAAGATCGTTATTCGCTTCCCCTTTCAGATAGAAGGGGAGCAACATCCTTACTGTGGCTATCCCGGTTTCAAATTAAGTTGCACCAATGATAACCAAACAGTTATTAAACTTCCTTACGTGGGAGGGTTCTATGTGCGCAACATTAACTACCTCAGACAACAGATACAAGTGTATGACCCCGATAATTGCCTTGCAAAACGTCTTCTGAGCCTAAACCTCTCAGGTTCTCCCTTTATTGCCACTTCACTCCATAACTACACCTTCTTAAGGTGCCCAACTCGGAACACAGGGTCACAGTTCATTCCCATTGACTGTCTTAGCAATTCTACATCTTTCGTGTCTGCTATTCCTTCACTGAACTTCACCAATTCATTGCCCAAGTCTTGCCATGTTATTAACAAGCTCTCATTTCCAGCTGCAAGGCCAGGACAATATGGAGATGGGGACATTTTCACAGATGACCTTGGTGGAGATCTTCAATTAACTTGGTATGCACCTGACTGTAGATATTGCGAATCACAAGGAGCCATGTGCGGATTTCAGACCATAAACACTGATCAAGTTAGTTGTTTCTATGATTACCAAACGGTAATCGGCATTGACCAATGTTTAGCTCTTCCACAACAAGGTCTTCGAGTATTTGGAATAATCACATTATCCATCGTGGGACCAGCTATCATATGTGCCATTGCGATGGTATGCTACGCGTCCTTAAAGTACAGAAGAGGCAACACAAGCAGAATTGCTGCAGATCAGAGGTCCGCAGCAAGTGCAACAGAAGCAGAAGCACAAGCTGCCACTGCTAGGATGGGCCTGGATGAGTCTACTATCGAGTCTTATCAGAAAGTGGTACTGGGCGAGAGCCGACGAGTGCCAGGACCCAATGACGGATGTTGCACCATATGTCTGTCAGAGTATAAAACCAAAGACACAATCAGATACATTCCCGAATGTGCACATTGCTTCCATGCTGAATGCATTGATGAATGGCTTCGCATGAACAGTACATGCCCCCTTTGCCGTAACTCTCCCTCCCCTCCTTCTACCCTTCTAGTTATGTCTGACCATTAA 1191 0.445 MDTLKVLFHILIFFSVTYALDDCRYYSWCSDNKIVIRFPFQIEGEQHPYCGYPGFKLSCTNDNQTVIKLPYVGGFYVRNINYLRQQIQVYDPDNCLAKRLLSLNLSGSPFIATSLHNYTFLRCPTRNTGSQFIPIDCLSNSTSFVSAIPSLNFTNSLPKSCHVINKLSFPAARPGQYGDGDIFTDDLGGDLQLTWYAPDCRYCESQGAMCGFQTINTDQVSCFYDYQTVIGIDQCLALPQQGLRVFGIITLSIVGPAIICAIAMVCYASLKYRRGNTSRIAADQRSAASATEAEAQAATARMGLDESTIESYQKVVLGESRRVPGPNDGCCTICLSEYKTKDTIRYIPECAHCFHAECIDEWLRMNSTCPLCRNSPSPPSTLLVMSDH 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03453 388 Pfam Wall-associated receptor kinase galacturonan-binding 23 91 IPR025287 GO:0030247
Pste5g03453 388 SMART ring_2 331 372 IPR001841 -
Pste5g03453 388 ProSiteProfiles Zinc finger RING-type profile. 331 373 IPR001841 -
Pste5g03453 388 Pfam Ring finger domain 331 373 IPR001841 -
Pste5g03453 388 CDD RING-H2_EL5-like 330 373 - -
Pste5g03453 388 Pfam Wall-associated receptor kinase C-terminal 156 225 IPR032872 -
Pste5g03453 388 SUPERFAMILY RING/U-box 324 377 - -
Pste5g03453 388 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 377 IPR046948 -
Pste5g03453 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 378 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03453 Pste-Chr5 27969337 27972699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03453 29 378 C3H Transcription Factor Family AT2G25410 43.855 7.39e-88 269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03453 5 27969337 27972699 Pste6g01795 6 8171589 8173905 PCT