Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03448 GTCGTTCTAGGTTGGTTGCTGTGTTCCGTACTTGGTTTTGGAGATTGACTTGACTTAAATATATTTAATATCCAAGTCTTTGGTGGCTATCAGTTTTAATTTATATCATTGTTTAACAAATCATTGACCCCTACCTTTTCTTGTTGCATTCGCACTACTTTAACTTTGGGAGGACCAAAATAAGTTTCTAATTAGAGTTGGATTTTGCAGGTCTTAATCTCCTGTTTCCGCAGAACTTAGGTGTTGTCTCTGGATGCTGAAGTAGTCTAGTCATGAATGCGAGGGAACCTAAATTTGTGAGGTTTGAGGACTGGAAATCGGAATCATCTTTTAGTATAGAACGGGAAGATTCTGTTACTGATGGAAATCACAAAAGAAGACCAAGTGTGACTGCTGTTTTGAAGAGTATAGGAAGAAGGCTGGAGAATGGGTCAGAGAAGATGAAGAACTTGAGAAGAGCCTCAGCTGTCCATCCTGTAAGTGATGGACAGAAAAAGCTGCCACCTAGGAAAAAAATTCTTGATCCACAGGGTCCAATCCTTCAGAAATGGAACAAAATCTTTGTAATAACGTGTGTGATGGCAGTCTCTGTGGACCCACTCTTCTTTTACATCCCAGTGATTAGAGAAAAAGAAAAATGCCTTGATTTGGATGGAGCATTGCAGATCACTGCCAGTGTTCTTCGTACCTTCTTTGATCTATTCTACATTCTTCGCATAATCTTTCAGTTTAAGACAGGGTTCATTGCTCCTCCTTCTCGTGTTTTTGGAAGGGGTGAGCTCATTGATGATCCTGTGGCTATAGTGAAAAGATACTTAACTTCACACTTCATCGTTGATATTCTGTCAATCATTCCACTTCCACAGGTTATTGTTTTAGCCATAAATCCAAACCTGAAAACATCAGATCCATTTGTAGCGAAGGATTTGTTGAAGTATTCAGTATTAATCCAGTATGTGCCAAGGCTTTGGCGGATCTATCCACTATTCAAAGAAGTAACTAGAACTTCTGGTATATTGACTGAGACAGCATGGGCTGGAGCTGCTTTTAATCTTTTTCTCTATATGCTAGCAAGTCACATAGTTGGAGCTAACTGGTATATGCTTTCGATAGAGTCAGAGCTGCGGTGCTGGCGTAGGGAGTTAAAAAAAGCTTCACTCTTTCGTCAAAAATACATGAGTTGTACAGAGCGCGATCCACATGTCCTTCCCACTCTCAATAGAACTTGTTCTTTAGTTGACCCTGAAAACATCAAAGACACAAACACCTTCAATTTCGGAATATTTTTTGATGCTCTAGATTCAGGTGTGGTGCAATCAACAACGGATTTTCCTCAGAAATTCTTCTACTGCTTTTGGTGGGGTTTACGCAATTTAAGTTCTCTTGGACAAAATCTCAAGACTAGTACTTACGTCTCAGAAATAGCCTTTGCAATCTTCATTGCGATCTTTGGATTGGTCTTATTCTCACTACTTATTGGAAACATGCAGAAATACCTGCAATCTACAACTGTTAGAGAGGAGGAGATGAGAGTAAAGAGACAGGATGCAGAACAGTGGATGTCCCACCGTATGCTTCCTGATAACTTGAAGGAAAGAATTAGACGGTATGAACAATACCAATGGCAAGAAAATAGGGGCGTTGAGGAGGAAACTTTAATTCGTAACCTTCCTAAAGATCTCAGAAGGGACATAAAACGTCACCTTTGCTTAGCTTTAGTTAAAAAAGTGCCAATGTTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATGTGCGATAGACTGAAGCCAGTCCTTTATACTGAGAAGAGCCACATTGTTCGTGAAGGAGATCCTGTTGATGAGATGCTTTTCATTATGCGTGGAAAAGTTTCTACAATGACAACAAATGGTGGAAGAACTGGTTTCTTCAATGCCTTGTTACTCCAGGCTGGTGACTTTTGTGGCGAGGAGCTTCTGACATGGGCTTTGGATCCCAACTCCTCCTCAAATCTACCAATTTCAACCAGAACTGTAGAAACCATATCAGAAGTTGAAGCCTTTGCCCTCATGGCTGATGATTTGAAGTTTGTTGCTTCTCAATTTCGACGTCTTCACAGCAAACAGCTCCAACACGCTTTCAGGCAAGGCTTGATAATTTATAAATATCATGTTAATTTCTTCTTTCTCCTCTTTGAAGATGCATCATTATATTTGACGAAGATAATCTTAAAGTTCTATTCATCACAGTGGAAGACATGGGCTGCCTGTTTCATACAAGCAGCTTGGCGTCGATACTGGAAAAGGAAGACTGAGAGGTCATTGCGTGAAGCAGAAGACCAGCTACAAGATGCTTTTGCAAATGAGGATGGGTCTAGTCTAAGCCTTGGTGCAACCATATATGCATCAAGGTTTGCTGCCAATGCTTTGCGAAACTTGAGAGAAAATAGCAGACACAATAGAATGCAACAGAGACTACTACCTCTGTTACCTCCAAAGCCAGCTGAGCCAGATTTCACTGCTCAGAAACACTAA 2513 0.4051 MNAREPKFVRFEDWKSESSFSIEREDSVTDGNHKRRPSVTAVLKSIGRRLENGSEKMKNLRRASAVHPVSDGQKKLPPRKKILDPQGPILQKWNKIFVITCVMAVSVDPLFFYIPVIREKEKCLDLDGALQITASVLRTFFDLFYILRIIFQFKTGFIAPPSRVFGRGELIDDPVAIVKRYLTSHFIVDILSIIPLPQVIVLAINPNLKTSDPFVAKDLLKYSVLIQYVPRLWRIYPLFKEVTRTSGILTETAWAGAAFNLFLYMLASHIVGANWYMLSIESELRCWRRELKKASLFRQKYMSCTERDPHVLPTLNRTCSLVDPENIKDTNTFNFGIFFDALDSGVVQSTTDFPQKFFYCFWWGLRNLSSLGQNLKTSTYVSEIAFAIFIAIFGLVLFSLLIGNMQKYLQSTTVREEEMRVKRQDAEQWMSHRMLPDNLKERIRRYEQYQWQENRGVEEETLIRNLPKDLRRDIKRHLCLALVKKVPMFEKMDEQLLDAMCDRLKPVLYTEKSHIVREGDPVDEMLFIMRGKVSTMTTNGGRTGFFNALLLQAGDFCGEELLTWALDPNSSSNLPISTRTVETISEVEAFALMADDLKFVASQFRRLHSKQLQHAFRQGLIIYKYHVNFFFLLFEDASLYLTKIILKFYSSQWKTWAACFIQAAWRRYWKRKTERSLREAEDQLQDAFANEDGSSLSLGATIYASRFAANALRNLRENSRHNRMQQRLLPLLPPKPAEPDFTAQKH 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03448 746 Gene3D Jelly Rolls 486 606 IPR014710 -
Pste5g03448 746 SUPERFAMILY Voltage-gated potassium channels 84 410 - -
Pste5g03448 746 Gene3D Helix hairpin bin 414 479 - -
Pste5g03448 746 ProSiteProfiles cAMP/cGMP binding motif profile. 488 572 IPR000595 -
Pste5g03448 746 CDD CAP_ED 488 617 IPR000595 -
Pste5g03448 746 FunFam Cyclic nucleotide-gated ion channel 1 415 479 - -
Pste5g03448 746 SMART cnmp_10 488 619 IPR000595 -
Pste5g03448 746 Coils Coil 670 690 - -
Pste5g03448 746 ProSiteProfiles IQ motif profile. 654 683 IPR000048 GO:0005515
Pste5g03448 746 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 69 741 - -
Pste5g03448 746 Coils Coil 43 63 - -
Pste5g03448 746 Pfam Ion transport protein 93 416 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pste5g03448 746 SUPERFAMILY cAMP-binding domain-like 415 613 IPR018490 -
Pste5g03448 746 Pfam Cyclic nucleotide-binding domain 509 598 IPR000595 -
Pste5g03448 746 Gene3D - 95 412 - -
Pste5g03448 746 FunFam Cyclic nucleotide-gated ion channel 1 486 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03448 Pste-Chr5 27940744 27944782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03448 1 743 Ion Channels AT5G53130 61.784 0.0 918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03448 5 27940744 27944782 Pste5g03448 5 27940744 27944782 ECH
Pste5g03448 5 27940744 27944782 Pste6g01798 6 8183746 8189200 PCT