Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03392 ATGGAGTCATCGACATGGTTGTGTTTTGAGGAAAAGGGGTTTCGTGTAGTGTGGGGTGTGAGGGTGTCACAAGGTTTGAACCTTTTGTTTTTTGGTCTTTTGGGGTTGATGGTGGTCAATGATGGATTTAGAAAGAGCTGGCTTATTGACATTGGAGGATTTGCAAAGAAAGTGAAAAGAACTACTATATCTTCAGCTGATCAAATTAAGGATTGTGGGGCTTATCGTGAATGTCCAAACTGTTCCTATCATATTGATAACAGTGATGTTTCTAGTGACTGGCCTGGCTTTCCTCTTGGTGTAAAGTTTGATCCTTCTGATTTAGAACTGGTAGAACATTTAGCAGCAAAACATGGCATTGGAAAACATCCAGAAAGTCTCCCAGGTGCTAGGAAAGATAGGAGTTATGTCTATTTCTTTCACAGAACAATCAATGCATATGCTACTGGTCAACGAAAGCGTGGAAAGATTCATCATCATGGTTTGACTGAAGAGCATGTGTGCTGGCATAAGACTGGTAAGACGAAAGCTATAATCGAATGGAGTACACAAGGGCTTTAA 561 0.4064 MESSTWLCFEEKGFRVVWGVRVSQGLNLLFFGLLGLMVVNDGFRKSWLIDIGGFAKKVKRTTISSADQIKDCGAYRECPNCSYHIDNSDVSSDWPGFPLGVKFDPSDLELVEHLAAKHGIGKHPESLPGARKDRSYVYFFHRTINAYATGQRKRGKIHHHGLTEEHVCWHKTGKTKAIIEWSTQGL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03392 186 SUPERFAMILY NAC domain 81 180 IPR036093 GO:0003677|GO:0006355
Pste5g03392 186 Pfam No apical meristem (NAM) protein 99 178 IPR003441 GO:0003677|GO:0006355
Pste5g03392 186 Gene3D NAC domain 101 185 IPR036093 GO:0003677|GO:0006355
Pste5g03392 186 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 45 120 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03392 Pste-Chr5 27302545 27305123 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03392 75 179 NAC Transcription Factor Family AT4G28500 37.692 9.48e-21 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste5g03392 NAM 5.3e-07 No_clan