Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03381 TTGAGGGTGAGATTATTAGGCCAACCAGCAGAAGACGGACAAAAGCCCAATACTTTTTGAAAATCAGCTGCAGGTTCCCCCCGCCGTGGCTGGCTTAGGGTTTTACTTTACCCCGTCGTTGAAATCCTCACTCCCCTCTTCCACTTGGAGACAGCAAAATGTCTGAAGTAAATGCGACCCCTGAAATCCCTCAAAACAACACCATTTACATCAACAACCTCAACGAGAAGATTAAGATTGATGAGTTGAAGAAGTCTTTGTTCGCTGTTTTCACTCAGTTCGGGAAGATACTTGAGGTGTTAGCTTTTAAAACCCTAAAGCACAAAGGTCAAGCTTGGGTGGTCTTTGAGGATGTTTCTTCTGCTTCCAATGCCCTAAGGCAAATGCAAGGTTTCCCGTTTTATGATAAGCCCATGAGAATACAGTATGCAAAGACCAAATCTGATGTAATAGCAAAAGCGGATGGCAAGAAACGAAAGGACCAACATGATGCTAATTTAGCTGGAATGGGCCTAAATCCAGCTTATGCTGGTGCTTATGGTGCAGCACCTGCTATATCTTATCCAGGTGGTGCAAAATCTATGGTACCTGAGGCTCCTGCGCCACCGAATAACATTCTCTTTATTCAGAATCTTCCTAATGACTCGACTCCAATGATGCTGCAAATGCTCTTTCTCCAATATCCTGGATTCAAGGAAGTTAGAATGGTTGAAACAAAGCCAGGGATTGCCTTTGTGGAATATGGAGATGAGATGCAGTCCACAGTTGCTATGCAAGCGCTGCAAGGTTTCAAGATAACGCCACAAAACCCTATGTTGATAACTTATGCCAAGAAATAGACAGCGGTTTCTTGAACTTTTTAGAAAGGTAGGAATCATATCTTCAGCAGAGTTGTTACTCCATTTAATGCAGTGGTGTATCTTAATTGGCACCTTTGGCAGCCTTGATTCGTGTATGATTGTAGTTAGAGATAATAACTGACATTTTTATACAAATATGTAGTTAAAAAATTACTGTTTCAAATTTACCTGTTAAAAAATTATTTTACTCTTTGTAGAATTGTCGTTTGTCATGCGTTTGCCTTATTTATTGAAAGGATTACCTGCAATACTTCGCCGGATGAAATTCAATGTGAATACACGATGTCTTATGCAAC 1156 0.4074 MSEVNATPEIPQNNTIYINNLNEKIKIDELKKSLFAVFTQFGKILEVLAFKTLKHKGQAWVVFEDVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGKKRKDQHDANLAGMGLNPAYAGAYGAAPAISYPGGAKSMVPEAPAPPNNILFIQNLPNDSTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03381 226 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 82 226 - -
Pste5g03381 226 SUPERFAMILY RNA-binding domain, RBD 12 215 IPR035979 GO:0003676
Pste5g03381 226 Gene3D - 7 112 IPR012677 -
Pste5g03381 226 FunFam U2 small nuclear ribonucleoprotein B'' 143 226 - -
Pste5g03381 226 CDD RRM1_U1A_like 15 92 - -
Pste5g03381 226 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Pste5g03381 226 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 213 IPR000504 GO:0003723
Pste5g03381 226 Gene3D - 140 226 IPR012677 -
Pste5g03381 226 CDD RRM2_U1A_like 150 222 - -
Pste5g03381 226 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 226 IPR000504 GO:0003723
Pste5g03381 226 SMART rrm1_1 15 89 IPR000504 GO:0003723
Pste5g03381 226 SMART rrm1_1 153 222 IPR000504 GO:0003723
Pste5g03381 226 FunFam U1 small nuclear ribonucleoprotein A 8 112 - -
Pste5g03381 226 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 93 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03381 Pste-Chr5 27176774 27181404 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03381 3 96 Eukaryotic Initiation Factors Gene Family AT4G34110 30.208 3.05e-06 45.8