Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03374 CACTCACACAAGGCACTCGCAGAAACAGCTGTGACCTGTGAGTGTGAGGCACTCCCTGTTTATAATTTGGTTAACTGTCATCACAGGAATAGAAGACAAGAAAGAAGAAAGAAGAAAGAAGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGTGAAAAATTGATGTAGAAAGAAAGGGGAATGAATGAATGGCGAAGAGGGAATTGAAGGAGAAGTTGCGCGAATTGGTGAAGGCCATCGTGGACTCCGACGACTACACGGTGAAAGCCGCCGACGAAGCCATGGCCATCCTTTCCGCTCTCAAAGATTTAAAGTCCCCAAACTCTCTCGACGACTTTTCACTTCCTCCTGAATTTCGCTGTCCCATCTCAACCCAGTTGATGACCGATCCCGTCATCTTATCCACCGGCCAGACTTATGATAGGCCATTTATTGAGAGGTGGTTGAATGAGGGTCACAGAACGTGTCCTCAGACCCAGCAGGTTCTGTCTCACTCTATTCTAACACCTAATCACCTTGTACGAGACATGATTCTGCAGTGGTGTAGGGACCGTGGACATGATTTACCCAACCCTGTTAACCAAGTTGTCACCAATGCTGATAGAAGCCATTTGAATTCTTTGCTTCACAAATTGTCCTTGTCCTCTTCCCTTTCTGACCAGAAAGAAGCTGCTAAGGAGCTTCGCCTTTTGACAAAGCGAATGCCTTCTATTCGAACACTTTTTGCGGAGTCCACTGATGTTATTCCACAGTTGCTCAGTCCGTTATCTTCCCCGGCCTCTGCTTCTGCTTCTGCTTCTGTTTCTGTTGACCCTGATCTCCATGAGGACTTGATCACCACCGTTTTGAATCTCTCCATCCATGATGATAATAAGAAGCTCTTTGCCGAGGATCCTGCTGTCATTTCTCTGCTTATTGATGCCTTCAAATCTGGAACTATTCAGACTAGAACCAATGCCGCTGCTGCTATTTTCACTCTTTCCGCCCTCGATTCCAACAAGCACATCATTGGTAAATCTGGGGCTATCAAACATTTGCTTCAGCTTTTGGATGAGGGACACCCATTGGCTATGAAAGATGCTGCTTCTGCCATATTTAACCTTTGTCTTGTGCACGAAAATAAGGGGAGGACCGTCCGAGATGGGGCTGTTCGGGTTATTCTAAACAAGATCATGGACCACATACTAGTTGACGAGTTGTTGGCTATATTGGCACTCTTATCCAGTCATCCCAAGGCAATTGAAGAAATGGGTGATTTAGGTGCTGTTCCTTTGTTATTGGGATTTATTAGGGAGAGCACATCTGAGAGGAGCAAGGAGAATTGTGTTGCAATTCTATACACGATCTGTTTTAGTGATAGAACAAAGTTGAAGGAAATTAGAGAAGAGGAAAAGACCAATGGTACGCTGTCACAGCTTGCTCAGTGTGGAACTTCTAGGGCAAAAAGGAAGGCTAACGGTATTCTTGAGAGGTTTAATAGATCCCACTCCTTAACTCACACTGCTTAGTCAAATTAATCCTCCAGCATTAGAAAGTCACCTCTTGTAAATACTTTTTTCGTGTTCTTCTGTACAAACCATCTCGGGTAGCTGTAAAAATGGAAAAGAGAAGTTCACATATTATGTACAGTACCTTCACTTAGAGTCAGGGTGAATGAGCAAAAATACTTTTTCCTTATTCCTTTATTTCATTTCAGTTTAATTCTTTTATCCCTTTTGAAAAAGCTCTTTTCTTTGCTAAAGGTACCATATTCTTCTATTTTTTAGCCTGACTGCCCGTGATTGATGTTTTTGTTATCCAAATTTGTAAGTATTCTCCACTTCTTTGTCGCTTAGCTAACCAACTTTGAGTGCTGACAAAGTGTCTGTTTGTATTTTGTTAATGGCGGTATTATAATTTATGTGGTTTTCGTTGCTGGTAACTTGGTATGAGAAGGGATAACTAATAAAAAGCGTGAATGTGGAAGTGGGGTATGGTTTTCGTTTGTTTTCATTCCCTCGCCAACCACTGAAGAGTGTCGGC 2027 0.4243 MAKRELKEKLRELVKAIVDSDDYTVKAADEAMAILSALKDLKSPNSLDDFSLPPEFRCPISTQLMTDPVILSTGQTYDRPFIERWLNEGHRTCPQTQQVLSHSILTPNHLVRDMILQWCRDRGHDLPNPVNQVVTNADRSHLNSLLHKLSLSSSLSDQKEAAKELRLLTKRMPSIRTLFAESTDVIPQLLSPLSSPASASASASVSVDPDLHEDLITTVLNLSIHDDNKKLFAEDPAVISLLIDAFKSGTIQTRTNAAAAIFTLSALDSNKHIIGKSGAIKHLLQLLDEGHPLAMKDAASAIFNLCLVHENKGRTVRDGAVRVILNKIMDHILVDELLAILALLSSHPKAIEEMGDLGAVPLLLGFIRESTSERSKENCVAILYTICFSDRTKLKEIREEEKTNGTLSQLAQCGTSRAKRKANGILERFNRSHSLTHTA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03374 439 Gene3D - 123 434 IPR011989 -
Pste5g03374 439 ProSiteProfiles U-box domain profile. 51 125 IPR003613 GO:0004842|GO:0016567
Pste5g03374 439 CDD RING-Ubox_PUB 53 105 IPR045210 -
Pste5g03374 439 SUPERFAMILY ARM repeat 106 429 IPR016024 -
Pste5g03374 439 PANTHER U BOX DOMAIN-CONTAINING 6 429 - -
Pste5g03374 439 SMART Ubox_2 55 118 IPR003613 GO:0004842|GO:0016567
Pste5g03374 439 SUPERFAMILY RING/U-box 41 129 - -
Pste5g03374 439 FunFam RING-type E3 ubiquitin transferase 51 125 - -
Pste5g03374 439 Pfam U-box domain 53 121 IPR003613 GO:0004842|GO:0016567
Pste5g03374 439 SMART arm_5 347 388 IPR000225 GO:0005515
Pste5g03374 439 SMART arm_5 225 266 IPR000225 GO:0005515
Pste5g03374 439 SMART arm_5 267 307 IPR000225 GO:0005515
Pste5g03374 439 Pfam Armadillo/beta-catenin-like repeat 270 306 IPR000225 GO:0005515
Pste5g03374 439 FunFam RING-type E3 ubiquitin transferase 132 434 - -
Pste5g03374 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 122 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03374 Pste-Chr5 27079424 27081526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03374 114 439 U-box Gene Family AT3G07360 57.567 5.53e-124 361