Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03361 GTTTTACAGGGAGCATTTTGAATTCCATTTTGAATTGGGCATAGGGCATCAGACATAAACCCCAAAAATTCGAGTATAGTTAGAGTGGGAGTGAGACAGGAAGTGAAGTAAGGAAGAGAAGAGAAGAGAGAAGAGAAAGTGTTCCAAAATGTTTAAGTTATCTCGCGTGCTTCCTCTCACTTCCAGTTCCAGACATACGGCACAGCTGTTGGAAATGGTGTCATCAAGGAAAGTTGAAGTTAGAGACTCTCTGCGGGATGGCTGTGGTTTTACGTATTCAGCTAGCATTTCTACTGCTACAAATAACTATGCTGCTAAAGGATATGCTTCGGATCGTGTATTCGCCCCTTATACTGTTTACAAGGGCAAAGCTGCATTCTCGATAAGTCCCTGTCTTCCAACTTTCACTAAGTTGGACTCAGGGACTGTTGTAGTTGATCGACGTGGTTCAATGATGATGACTTTCATGCATTCTGTTGGAGAGCGTAAATATGACTGGGAGAAGAGACAGAGATTTGCTTTGTCGGCAACTGAAGTTGGTTCTTTGATAACCATGGGTGCTCAAGATTCCTGTGAATTCTTTCATGACCCCTCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTCATGCAAACAACAATGGCTACTTTGTGTCTTTGACTGTTGTCAACAACTTGTTAAACACCAAAGACTACTTCAGTGTTCCTATCACAACTGCTGAGTTTGCTTTTGCTTTGCCACACATTATGGGTTGGGACCAGATAACTAATCAGCAATCCAGAGACACAGTTGGTCTTCAACCTAAGGGTGACTCTCAAGTTTTAGATTTGGAATGGGAAAAATGAATTGCTGCAGAGGATATCCGAATATGAAATGGATCCTAGTTTGTTTCGCAATTCCATTTTTGTATATTGTCAATTTGAAGACTGAGATTGCCGGGGGAAGATAACTTGTAAATTGCAATCTTTAGGAAAGATATGAGAAGTATCAACGTCATCTTGCCTTTAGTCATGTTTATGTTATATAACTTGTTAACCAGTATGGTCTTCTGCCTGGCTTTGAAAATACAATAGTATTGGCTGTTTGAAAATCATTGGTTGTTAATGGTTGTGTCCAG 1137 0.4019 MFKLSRVLPLTSSSRHTAQLLEMVSSRKVEVRDSLRDGCGFTYSASISTATNNYAAKGYASDRVFAPYTVYKGKAAFSISPCLPTFTKLDSGTVVVDRRGSMMMTFMHSVGERKYDWEKRQRFALSATEVGSLITMGAQDSCEFFHDPSMLSSNAGQVRKSLSIKPHANNNGYFVSLTVVNNLLNTKDYFSVPITTAEFAFALPHIMGWDQITNQQSRDTVGLQPKGDSQVLDLEWEK 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03361 238 Gene3D Transcriptional Coactivator Pc4; Chain A 54 220 IPR009044 GO:0003677|GO:0006355
Pste5g03361 238 Pfam Whirly transcription factor 70 200 IPR013742 GO:0003697|GO:0006355|GO:0006952
Pste5g03361 238 SUPERFAMILY ssDNA-binding transcriptional regulator domain 61 219 IPR009044 GO:0003677|GO:0006355
Pste5g03361 238 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 43 238 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03361 Pste-Chr5 26826395 26830359 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03361 40 238 Whirly Transcription Factor Family AT1G71260 57.277 3.84e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Pste5g03361 Whirly 4.9e-53 CL0609