LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g03361	GTTTTACAGGGAGCATTTTGAATTCCATTTTGAATTGGGCATAGGGCATCAGACATAAACCCCAAAAATTCGAGTATAGTTAGAGTGGGAGTGAGACAGGAAGTGAAGTAAGGAAGAGAAGAGAAGAGAGAAGAGAAAGTGTTCCAAAATGTTTAAGTTATCTCGCGTGCTTCCTCTCACTTCCAGTTCCAGACATACGGCACAGCTGTTGGAAATGGTGTCATCAAGGAAAGTTGAAGTTAGAGACTCTCTGCGGGATGGCTGTGGTTTTACGTATTCAGCTAGCATTTCTACTGCTACAAATAACTATGCTGCTAAAGGATATGCTTCGGATCGTGTATTCGCCCCTTATACTGTTTACAAGGGCAAAGCTGCATTCTCGATAAGTCCCTGTCTTCCAACTTTCACTAAGTTGGACTCAGGGACTGTTGTAGTTGATCGACGTGGTTCAATGATGATGACTTTCATGCATTCTGTTGGAGAGCGTAAATATGACTGGGAGAAGAGACAGAGATTTGCTTTGTCGGCAACTGAAGTTGGTTCTTTGATAACCATGGGTGCTCAAGATTCCTGTGAATTCTTTCATGACCCCTCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTCATGCAAACAACAATGGCTACTTTGTGTCTTTGACTGTTGTCAACAACTTGTTAAACACCAAAGACTACTTCAGTGTTCCTATCACAACTGCTGAGTTTGCTTTTGCTTTGCCACACATTATGGGTTGGGACCAGATAACTAATCAGCAATCCAGAGACACAGTTGGTCTTCAACCTAAGGGTGACTCTCAAGTTTTAGATTTGGAATGGGAAAAATGAATTGCTGCAGAGGATATCCGAATATGAAATGGATCCTAGTTTGTTTCGCAATTCCATTTTTGTATATTGTCAATTTGAAGACTGAGATTGCCGGGGGAAGATAACTTGTAAATTGCAATCTTTAGGAAAGATATGAGAAGTATCAACGTCATCTTGCCTTTAGTCATGTTTATGTTATATAACTTGTTAACCAGTATGGTCTTCTGCCTGGCTTTGAAAATACAATAGTATTGGCTGTTTGAAAATCATTGGTTGTTAATGGTTGTGTCCAG	1137	0.4019	MFKLSRVLPLTSSSRHTAQLLEMVSSRKVEVRDSLRDGCGFTYSASISTATNNYAAKGYASDRVFAPYTVYKGKAAFSISPCLPTFTKLDSGTVVVDRRGSMMMTFMHSVGERKYDWEKRQRFALSATEVGSLITMGAQDSCEFFHDPSMLSSNAGQVRKSLSIKPHANNNGYFVSLTVVNNLLNTKDYFSVPITTAEFAFALPHIMGWDQITNQQSRDTVGLQPKGDSQVLDLEWEK	238

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g03361	238	Gene3D	Transcriptional Coactivator Pc4; Chain A	54	220	IPR009044	GO:0003677\|GO:0006355
	Pste5g03361	238	Pfam	Whirly transcription factor	70	200	IPR013742	GO:0003697\|GO:0006355\|GO:0006952
	Pste5g03361	238	SUPERFAMILY	ssDNA-binding transcriptional regulator domain	61	219	IPR009044	GO:0003677\|GO:0006355
	Pste5g03361	238	PANTHER	SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL	43	238	IPR013742	GO:0003697\|GO:0006355\|GO:0006952

Showing 1 to 4 of 4 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g03361	Pste-Chr5	26826395	26830359	Dispersed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g03361	40	238	Whirly Transcription Factor Family	AT1G71260	57.277	3.84e-85	251

Showing 1 to 1 of 1 entries

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Whirly	Pste5g03361		Whirly	4.9e-53	CL0609

Showing 1 to 1 of 1 entries