Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03348 AGAATATCTGTCTGGGTGGAAGAAAGAAGAAGGAGAATGATTTTGATGTTGTATAAATAAAAAGAAAGGGTGTGGTTTGTAAAATCCTGGCGGGGACAGCAGTGGGAGGTCGCAGCTTGATTTGACGATGGCGTTGTTCAGTTGAGGCGGCACATCCAAACGTTGACTTTTGGGGGAAGAAGAGAATGGAGCAATCGGTTTTAGATGACATAATCAATCGTCTCCTCGAAGTTCGTACCCGACCGGGCAAGCAGGTCCACCTATCTGAGTCTGAGATCCGCCACCTCTGCGTTGCTTCCTCAGATATTTTCTTGCAACAGCCTAACTTATTAGAGCTCGAAGCTCCTATTAAGATTTGTGGTGATGTACATGGGCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGTGGGTTACCTCCTGAAGCCAACTACTTGTTCTTGGGGGATTATGTGGATCGAGGGAAGCAGAGTTTAGAAACAATTTGCCTTCTCCTCGCTTACAAAATAAAATACCCTGAGAACTTTTTCCTGTTAAGGGGAAACCATGAATGTGCTTCTATAAACCGGATATATGGGTTTTATGATGAATGCAAGAGAAGGTTCAATGTAAGGTTATGGAAGACATTTACAGACTGCTTTAATTGCCTACCTGTGGCAGCCCTTGTTGATGAAAAGATTTTGTGTATGCATGGGGGACTTTCTCCTGACTTAAATAATTTGGATCTGATTAGGAATCTACAACGGCCCACAGATGTTCCTGATTCAGGTTTGCTTTGTGATCTCCTTTGGTCTGACCCAGGTAAAGATGTTCAAGGATGGGGAATGAATGACAGAGGAGTTTCATATACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAGAAACATGATCTTGACCTTATTTGTCGAGCTCATCAGGTTGTAGAAGATGGATATGAGTTCTTTGCTAATCGACAGCTTGTAACAATATTTTCAGCACCTAATTATTGTGGGGAGTTTGACAATGCTGGTGCTATGATGAGTGTTGATGAGACACTAATGTGCTCTTTCCAAATATTGAAGCCAGCTGATAGAAAAGCAAAACCTAATTTTGGAAGCACAACCACTGCTAAGCCTGGGAACTCTCTGGTAGGTTCCGAATATTGTTGGTTGGACTGGAAGCACCCTAAGACCAGGGTCATGGCATTAGATGATACCCAAAGTGAGGGGTTAGTCCCGTACACAAAGGATTTAATCGTGTGGGACACCTGTTCTTGCTTAGACCAAAACAAGCTCAACTGGAATGTCCTATCAGTCACTCAATTCAAGCGATTATATCACATCACTTAGCATGCGCTGAATAGTCCACATGCGCTGAATAGTCGACATGTTCTGTATTTTTCGTTGTTCACACTTTTTGCATTCGCCAATATATTCTAAATTTTGTCTCCTCACAATCCGATGCAGTCCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCATAAAAGGTTGCTGCTACTACGGGTCAGCTTGTGATTAACTCCAAATGGTTCCAAAAAGGGGAGAGTAGAGTTCCATTTCGTCTATGATATTTTGGAATTGTAAAATCAAAGGAAAACACCATTATGAACTATGTAAATCATTGTTTTTTATCGGCACAAATTTGCATTTCAAGATGGAGAACCATAATCTCCTTGTCCTCGTTGTACACTAATAGTTGGTATATTTTCTTAACTGTAAACTTCTCAAGCGTAGATGGATAATCCGCATCTGTTGCTGAGAACCATTTAGAAATGCTTATACGATTGACATATATGGATGTCAGTTGAGGCTGGTAAGACAGAATGTCGTTCAATGTCTTCGTTTCAAGTGTTGATTATCTTTTTCGAGTGAG 1878 0.4095 MEQSVLDDIINRLLEVRTRPGKQVHLSESEIRHLCVASSDIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALVDEKILCMHGGLSPDLNNLDLIRNLQRPTDVPDSGLLCDLLWSDPGKDVQGWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADRKAKPNFGSTTTAKPGNSLVGSEYCWLDWKHPKTRVMALDDTQSEGLVPYTKDLIVWDTCSCLDQNKLNWNVLSVTQFKRLYHIT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03348 381 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Pste5g03348 381 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Pste5g03348 381 Gene3D - 1 305 IPR029052 -
Pste5g03348 381 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Pste5g03348 381 FunFam Serine/threonine-protein phosphatase 52 305 - -
Pste5g03348 381 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 300 - -
Pste5g03348 381 CDD MPP_PP1_PPKL 5 294 - -
Pste5g03348 381 SMART pp2a_7 26 296 IPR006186 GO:0016787
Pste5g03348 381 SUPERFAMILY Metallo-dependent phosphatases 18 298 IPR029052 -
Pste5g03348 381 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Pste5g03348 381 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Pste5g03348 381 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Pste5g03348 381 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Pste5g03348 381 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Pste5g03348 381 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Pste5g03348 381 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03348 Pste-Chr5 26722550 26727578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03348 55 239 Calmodulin-binding Proteins AT5G63870 31.364 3.50e-26 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03348 5 26722550 26727578 Pste4g00191 4 1606295 1610494 ECH
Pste5g03348 5 26722550 26727578 Pste5g03348 5 26722550 26727578 ECH