Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03333 GCTAGTTCTTATGTTTTCAAAGTGTGGAGTTGCAGTGTGATGAACATCACCATGACCAGAACTCCATGTTGTGAGAGAATGGGATTGAAGAAGGGACCTTGGACTGCTGAAGAAGACCAGATATTGGTCTCTCATATTCAACGATATGGCCATGGAAACTGGCGTGCGCTTCCTAAACAAGCTGGTTTGTTGCGGTGTGGCAAGAGTTGTCGGCTTCGTTGGATAAATTACTTGAGGCCAGATATTAAACGAGGCAAATTCAGCAAGGAAGAAGAAGATACCATCCTAAAGCTGCATCAAATCCTTGGAAATAGATGGTCTGCTATAGCAACGAGCTTACCCGGAAGAACAGACAATGAAATAAAGAATTTTTGGCATACCCATTTGAAGAAGCGGATCCACAAACAAATATTGCAAGAGGCACAAGCAAATAATTCGCAAGCATCAAGTGCTAGTGCTGCTTCTACTGTTGTTGGAAATGTAATGATTTCTAATTACGGTTTATCCTCGATCAATCCACCTATTGTAGGTACAGGATTTTACGGTGCAGTATCTTCACATACTTTTGTAGAAACTATGGACAATCATGGTTCCTGTCAGCTCAGTGAAGAAATGCAATTTTGGTACAATGTATTCATCAAATCAAATCAGGACAAACATCCTCAGGCAAAGGAAATCTAG 681 0.4097 ASSYVFKVWSCSVMNITMTRTPCCERMGLKKGPWTAEEDQILVSHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDTILKLHQILGNRWSAIATSLPGRTDNEIKNFWHTHLKKRIHKQILQEAQANNSQASSASAASTVVGNVMISNYGLSSINPPIVGTGFYGAVSSHTFVETMDNHGSCQLSEEMQFWYNVFIKSNQDKHPQAKEI 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03333 226 CDD SANT 86 129 IPR001005 -
Pste5g03333 226 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Pste5g03333 226 Gene3D - 30 83 - -
Pste5g03333 226 FunFam MYB-related transcription factor 30 83 - -
Pste5g03333 226 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Pste5g03333 226 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Pste5g03333 226 Pfam Myb-like DNA-binding domain 84 129 IPR001005 -
Pste5g03333 226 SUPERFAMILY Homeodomain-like 27 125 IPR009057 -
Pste5g03333 226 FunFam MYB transcription factor 86 157 - -
Pste5g03333 226 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 155 - -
Pste5g03333 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Pste5g03333 226 Gene3D - 85 156 - -
Pste5g03333 226 SMART sant 30 80 IPR001005 -
Pste5g03333 226 SMART sant 83 131 IPR001005 -
Pste5g03333 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 78 IPR017930 -
Pste5g03333 226 CDD SANT 33 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03333 Pste-Chr5 26523441 26524284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03333 18 154 MYB Transcription Factor Family AT1G06180 70.803 7.05e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste5g03333 Myb_DNA-binding 2.7e-14 CL0123