Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03320 GACGGATTAGAGTTGGGGTTCTGATATTGTTTAAGTTAAACACGACAAACTCAAATACATGTGCATTACAACTCCTACCCCTCATCCTCTTCTTCTCTCTCATACCCTTAGCTTTTATAGATTCCATTTCCTGTTTTTCCTAATTCCAGAGTACCCAGTAATAATCTCGTCAACCCTTTATACACAAAGTTGATTCACTTGGGAGCCTCGAGAGCTATGTCTACATCTTCTCGTGTTCTTCCCACTCCCTTGGGAAACAAGTATATGAAACCCCCAGATTCTTTTCAGCTTTCACCTGTCAGAGATCTGAATGCAAATTCTACCCCATCAAATTCAATCAGAAATTCTGCGAGGATTTTCGCCTCAACTTCTGAATGTTCCGATGACATCCCTTTTTCCTCTGTTTCACAGCATGATAGGCAATATCAAGATCCCCCCTTTGTTTCTGAGACATTGGGTGATAATGTGTCTTCTGAGATACATTCAAGAGCATTCATTTCTCACCCTCAAGAAAATGAAGATATTTCCTGGGGACCAGATCCGTTTCAGGATATTCTTGATTTTTCTGAAAATGTTTCTGTCCAGCAAGACCAGGTGGAAAACAATGCATGTTACATAAATGATGATAATGTCAAAAGATCTGATTTTGGAGAGTGGGTTGATCAGTTAATGTCAATTGATGATTCTCTTCACCCAAACTGGAGTCAGCTTCTTGGTGATGACAGTGTAGCAGAACCTAAGCCAAAGGCATGTCAGGTTTCTCTGCAACAGCATATACAATCTGGAGAAGTTCTTTCTAATTCAGCAGCATCTGCACCACAGACTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGATGGCCTTACCATCTATCATGTAAAAAGCCACTTACAGAAATATAGAACTGCAAGATACAAACCAGAGCCATCAGAAGAGGGAATGAACATAAAAGGAGGAAGGAAAGAAAAGTCTAAAAACAAAAATTCAATTTTTCCTCTTCATATTGAAGATTTGAAGTTCAAATTATTTTATCCTTTTCTCTCGTCCAAACAAAAAGAATGGGTTGAATGCCATTTTTTCTCCCATTCTCTATTGAGTTGCTTTTCTATGCCTGCAGGAACGTCTGAGAAAAAGGTGACACCAATAGATGACATGAAATCTCTGGACTTGAAAACGAGTAAGGGAATAACTGAAGCATTACGACTACAAATGGAACTCCAGAAGCGACTTCACGAACAACTTGAGATCCAAAGAAAGCTGCAGATTCAAATTGAAGACCAAGGGAAACGTCTTCAGATGATGTTTGAGAAACAGAGAGAGATGGGTGACAACAGCAAGGTGAAGGGGTCTTCCTCCGAGCCTTGTGCTTCTGCTGCACCATCAGAGACAGTAGTAGAAACTCCAAATGAGGATCGTCACAAATTTGAAAACATTCCAAAAGGATTGCCTGAAGAGAAGGATGGAACCGAAAAGCAAATGACAGGTGAAGCTGAAGAAGTGATGAATGAAGATGAAGCTGGACCACCCACAAAACGGGTGAAAAGCTCATAACAATAGGATTGTTTGTTTAATATTGTTGGACTTGTTTAGAATTCATGGAACTTGTAGAAATATTATTGGATCCAGGGACGTCTTAACTTTGTCATTTATGACAACCTCATGCTTTAAGGTTATCGTGATCCTTTTTTTCTTTGAAAACATGACATCACTGTCACCGGTAAGTAAGGTAATGGTGGGATTGGCTCAATGCATGCAATTTTGTTACGATCCTCTTCATAGTGGCCCTTAAACTACTTATCAAGGAGGTCTTTTCACATGTAAACTGGCATACTTATACCCGTGTTTTTTACGAGTTATTATTAATGCACAAAAATAAATGATTTAATTTGGCTATAATACATTAAGGT 1991 0.3938 MSTSSRVLPTPLGNKYMKPPDSFQLSPVRDLNANSTPSNSIRNSARIFASTSECSDDIPFSSVSQHDRQYQDPPFVSETLGDNVSSEIHSRAFISHPQENEDISWGPDPFQDILDFSENVSVQQDQVENNACYINDDNVKRSDFGEWVDQLMSIDDSLHPNWSQLLGDDSVAEPKPKACQVSLQQHIQSGEVLSNSAASAPQTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVDGLTIYHVKSHLQKYRTARYKPEPSEEGMNIKGGRKEKSKNKNSIFPLHIEDLKFKLFYPFLSSKQKEWVECHFFSHSLLSCFSMPAGTSEKKVTPIDDMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQREMGDNSKVKGSSSEPCASAAPSETVVETPNEDRHKFENIPKGLPEEKDGTEKQMTGEAEEVMNEDEAGPPTKRVKSS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03320 472 MobiDBLite consensus disorder prediction 422 472 - -
Pste5g03320 472 Pfam MYB-CC type transfactor, LHEQLE motif 352 396 IPR025756 -
Pste5g03320 472 MobiDBLite consensus disorder prediction 395 472 - -
Pste5g03320 472 Pfam Myb-like DNA-binding domain 206 257 IPR001005 -
Pste5g03320 472 Gene3D - 203 262 - -
Pste5g03320 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 261 IPR017930 -
Pste5g03320 472 SUPERFAMILY Homeodomain-like 202 258 IPR009057 -
Pste5g03320 472 Coils Coil 353 373 - -
Pste5g03320 472 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 186 448 IPR044848 GO:0003700
Pste5g03320 472 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 258 IPR006447 GO:0003677
Pste5g03320 472 MobiDBLite consensus disorder prediction 261 281 - -
Pste5g03320 472 FunFam Myb family transcription factor 203 261 - -
Pste5g03320 472 MobiDBLite consensus disorder prediction 403 420 - -
Pste5g03320 472 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03320 Pste-Chr5 26393507 26397835 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03320 87 408 G2-like Transcription Factor Family AT3G04450 39.169 2.55e-59 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pste5g03320 Myb_DNA-binding 1.6e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03320 5 26393507 26397835 Pste5g03320 5 26393507 26397835 ECH
Pste5g03320 5 26393507 26397835 Pste4g01794 4 13414319 13422793 PCT