LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g03314	ATGGAGACCTTGGGAATTTCTGATAATGAGGTGCAACCAGTGTTGATAAATCTATTGCGAGTTTATGAAGGAAACTGGGAACTTATTGAAGATGACAATTATCGGACACTCGTAGATGCATACTTCGATTTTGAGAAAGACAAGGGAGCTGAATGTGAGAGAAAAGCTGATGCCAGTTCTGATGGTGGAGAAAAATCAAGAAGAGAACCGCTCTGGGTAGATGAAGACCACCAGGATTTACCAAGCATGAACAGCCCAAGCCAAACCTTATTATGTGCAGAAGAAAATAAAATTTCACCAATGATCTCTCGACAGAAACTCATTGGGCCGTCTCAAACATTCATGGGAGATATTAAACCCAAAACCAGTTTACAAGCATCTCATAAAATGTTGAGTGAGGTAGAAAAGATCTCAAATTTACTTCCTATGGCAGCTAAAGATGGAAGATCATATCCTGAGAATGCAACATCTGCAGAGCTTTGTCTTCCTGTCGAGAAAGGGCATGAGAAGCCAAGAACTAAGAAACCCAAGATACAATCTACTTCAACGAATCATAATGGTTTATCTGATGCGTCAGATGGAAATCTTTGTGCCAAATCTCTGTCAACTCAGGATCAGGATATGCGTAATAATGATGTTATATCTGTAAGCAACAATAAATCGACAGCTTATAATGGAAATATTACGATTGGTAGTTCTTCAAGTCTGGGAGAAGTAAAAATCTATTTGAATTGTGACTCTGCCTTGGGACAGCCAAACTTCAGTATTCCAAATTTGGATCTAGTTATGAAGTTGATGGACAAAATGTACCTTTGCTTGTACAAAAGGGTTGGACCTCAAGTTTGTATGGCGGAGCTATTAGATGAGCTTTGCAGGACTTATCTTAAGTTGGGATATGGAAAGGGATCAACTTCCAAGCATGCCAATTCACATTCACAGCAATGTGTTAATCAAGGTGAAAGGAAGCCCTTTCATTTTATAAGTGACATAACAAAAGGTTCAGAAAAGGTGAAAATATCATTAATAGGTGAAAATGGCAGTGAAGAGTTGCCAAAGTTTAATTATATACCATCGAATATAATATATCAAAGTGCTATTGTAAGTATTTCTTTGGCTCGGATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAGGCGACTGTCTTTCCTCACCATTGCCTTGTGCATGTGCTCAGGAAACTGGTGGAGAGTATGCTTACACTCCACAAGGTTTGTTGAAAGAAGAGTTTCTAAAAGCTTGTGTGTCTATGAAGAATGAACCTCTAGATCATCATTATGTGTACTGTCAGGAGTGCCCTTTGGAGAAGTCCAAGAATGAGTACACGCCCGATCCATGCAAGGGGCATATGGTTAGGAAATTTATAAAGGAATGTTGGAGGAAATGTGGATGTGACATGAATTGTGGGAATCGGATAGTGCAACGTGGTATAGCATGCAAATTGCAGGTCTTCTTAACTGGTCAAGGTAAAGGCTGGGGCATTAGAACGTTAGAAGATTTACCGAAAGGAACTTTCGTATGTGAATATGTTGGAGAAATATTAACCAATATGGAGTTATACGATAGGATTATGCAGGAAAGTGTGAAAGACAGACATACATATCCCCTAACTCTTGATGCGGACTGGGGCTCGGAAAAGGGGTTAAAGGATGAGGAGGCTCTATGTTTAGATGCAACAAATAATGGAAATGTTGGAAGGTTCATCAATCATAGATGCTATGATGCAAATCTCATAGACATTCCTGTTGAAATAGAGAGTCCAGATCACCATTATTATCATTCATTTCCGGGTACACTTAAAACTTTGTATTTTGTTACCTTTTTGCAGCTTGCCTTCTTCACCAATAGGAAAGTGAATGCGTATGAAGAGTTGACATGGGTAAGTCAGTTGGACCGATAG	1917	0.3933	METLGISDNEVQPVLINLLRVYEGNWELIEDDNYRTLVDAYFDFEKDKGAECERKADASSDGGEKSRREPLWVDEDHQDLPSMNSPSQTLLCAEENKISPMISRQKLIGPSQTFMGDIKPKTSLQASHKMLSEVEKISNLLPMAAKDGRSYPENATSAELCLPVEKGHEKPRTKKPKIQSTSTNHNGLSDASDGNLCAKSLSTQDQDMRNNDVISVSNNKSTAYNGNITIGSSSSLGEVKIYLNCDSALGQPNFSIPNLDLVMKLMDKMYLCLYKRVGPQVCMAELLDELCRTYLKLGYGKGSTSKHANSHSQQCVNQGERKPFHFISDITKGSEKVKISLIGENGSEELPKFNYIPSNIIYQSAIVSISLARISDEGCCSDCSGDCLSSPLPCACAQETGGEYAYTPQGLLKEEFLKACVSMKNEPLDHHYVYCQECPLEKSKNEYTPDPCKGHMVRKFIKECWRKCGCDMNCGNRIVQRGIACKLQVFLTGQGKGWGIRTLEDLPKGTFVCEYVGEILTNMELYDRIMQESVKDRHTYPLTLDADWGSEKGLKDEEALCLDATNNGNVGRFINHRCYDANLIDIPVEIESPDHHYYHSFPGTLKTLYFVTFLQLAFFTNRKVNAYEELTWVSQLDR	638

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g03314	638	SMART	preset_2	327	469	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Pste5g03314	638	SMART	set_7	485	638	IPR001214	GO:0005515
	Pste5g03314	638	Gene3D	-	1	47	IPR043017	-
	Pste5g03314	638	SUPERFAMILY	SET domain	340	632	IPR046341	-
	Pste5g03314	638	Gene3D	SET domain	303	633	IPR046341	-
	Pste5g03314	638	MobiDBLite	consensus disorder prediction	164	196	-	-
	Pste5g03314	638	Pfam	Ubiquitin-binding WIYLD domain	1	43	IPR018848	-
	Pste5g03314	638	MobiDBLite	consensus disorder prediction	177	196	-	-
	Pste5g03314	638	Pfam	SET domain	497	632	IPR001214	GO:0005515
	Pste5g03314	638	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	635	IPR025776	-
	Pste5g03314	638	Pfam	Pre-SET motif	330	477	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Pste5g03314	638	CDD	SET_SETDB-like	351	632	-	-
	Pste5g03314	638	ProSiteProfiles	SET domain profile.	485	635	IPR001214	GO:0005515
	Pste5g03314	638	MobiDBLite	consensus disorder prediction	52	86	-	-
	Pste5g03314	638	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	1	636	-	-
	Pste5g03314	638	ProSiteProfiles	Pre-SET domain profile.	379	482	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Pste5g03314	638	MobiDBLite	consensus disorder prediction	52	76	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g03314	Pste-Chr5	26337229	26344312	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g03314	461	599	C2H2 Transcription Factor Family	AT2G23740	42.857	9.53e-24	105

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Pste5g03314		Pre-SET	1.1e-16	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste5g03314	5	26337229	26344312	Pste4g00755	4	5850998	5861556	PCT