Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03269 CTCAAACCTCTTTATCCTCCTCACATCTCAAACCTATATAGTTTTGTGAACCCAATTAAGCACAGGAGCGCACCAACTAATTCCTAAAGGTTGTTGAATTAAATGACTAGTGTTATGGAGGCGGAGCGAGACAAGTACAAGATGATCAATTTTGAAGAGACCGAGTTGCGACTCGGCCTCCCACTGAGTGGAAACGAGGGCGAGTCCACCCTCAAAAACGCTGCTTGCACTGGTGGAAAGAGGGGTTTTTCCGATACAACCACTGCTACCGTGGATTTGAAGCTTAACCTTTCCTCAACCTCTAACAATGCTTCTTCTGACGTCACTAAAGAGACCAACATCACTGCTGCTGCACCTCCTCGTACTAACGACCCCGCCAAGCCACCCGCTAAGGCACAAGTGGTAGGGTGGCCACCAGTGCGGTCATTCAGAAAGAACATTGTGAACAACGTTCAAAGGAGTAACAACAGTGAGAGTGAGGGGGAAAAAGGTGGCAGCAACACGGGAGCAGCTTTCGTGAAGGTGAGCATGGATGGTGCTCCCTATCTACGCAAGGTGGACTTGAAGTTGTACCAGAGCTACCAAGACCTCTCCGATGCACTTGCTAAAATGTTCAGTTCATTCACCACTGACAACTGTGGCTCTGGGTCCCAAGGGATGAAAGACTTCATCAACGAGACCAAATTGATCCATCTTCTCAACGGCTCTGATTACGTTCCAACCTATGAAGACAAAGATGGTGACTGGATGCTCGTCGGCGACGTACCCTGGCAAATGTTCGTCGAATCATGCAAACGCCTGCGTATAATGAAAGGATCTGAGGCCATTGGGCTAGCACCAAGAGCTGTGGAGAAGTGCAAGAACAGAAGCTAGCTAGGGTCAATTTTGTACATTCCATGTTCCACAACAATCTGCTCTGTTGCTTGCTCCTGGATGAGCAAGGTTATATAAAGTGTCCGTACCATTTTTTAGAAATAATTTTCTTGTATATGTATTGTGTATTTTATTATATATATGAGAAAGTAGTTGGAAATTAGGGACATGCAAGAAATAATGGAGTATGTTTATACGAGCCCGCTTTTGTTTCTAAGTAGAAAACGTTACATTGTCCATTGTTGGTGTGCTTGTCTAATATAAGAATAAACTACGTTTAACTGTACATGCATACCCGGCTCGTTATAACACGTATTAATTTATTTGTCACATACATTATTAGGAGGTAGCATCCGTTTCTCCTTTTGGGGGCTGATGCTGATGGATCCGGTTGGCGAGCAGAGTGATAAGGTGGGCCAGACAGGATCATGTGCTTCGTGCAACAGCCTTTCATTTAGGGCTCCACTTATTTATTTCATATGTTCCCATTTTGTTTCCTGTGGCCTTCCTTTCCTTGTCTCATATCTCTTTGCCTAGGTTGGGAAATCCTCTTTCACTGCATAACACAATTATCCCCTTACTACTCATTTGCAGAATCTTTGATGTAACACACTACATTCATTTTATTATTGATTGATTTATTTTATATATAAAGTAAGATAGAAATACA 1543 0.4336 MTSVMEAERDKYKMINFEETELRLGLPLSGNEGESTLKNAACTGGKRGFSDTTTATVDLKLNLSSTSNNASSDVTKETNITAAAPPRTNDPAKPPAKAQVVGWPPVRSFRKNIVNNVQRSNNSESEGEKGGSNTGAAFVKVSMDGAPYLRKVDLKLYQSYQDLSDALAKMFSSFTTDNCGSGSQGMKDFINETKLIHLLNGSDYVPTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03269 256 SUPERFAMILY CAD & PB1 domains 133 237 - -
Pste5g03269 256 Gene3D - 131 250 - -
Pste5g03269 256 MobiDBLite consensus disorder prediction 65 85 - -
Pste5g03269 256 MobiDBLite consensus disorder prediction 65 99 - -
Pste5g03269 256 Pfam AUX/IAA family 19 247 IPR033389 -
Pste5g03269 256 ProSiteProfiles PB1 domain profile. 136 238 IPR000270 GO:0005515
Pste5g03269 256 FunFam Auxin-responsive protein 131 248 - -
Pste5g03269 256 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 243 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03269 Pste-Chr5 25966982 25969578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03269 118 241 B3 DNA Binding Superfamily AT2G46530 31.452 1.75e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pste5g03269 AUX_IAA 3.8e-85 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03269 5 25966982 25969578 Pste5g03269 5 25966982 25969578 ECH