LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g03251	TATTCTGGAGAGGGAAATCTCTTGCTATTTGATCACATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAGGGTGCCTTTGGTTCTGCTCTTCTTGTGAAACATAAGCATGAAAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCTCGTAGATCTGCTCACCAGGAGATGGAGCTCCTCTCCAAATTAAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAAGCTAGTGGTGTTATGTTTCCTGAGGAGAAACTATGTAAGTGGCTCGTTCAACTTCTTATGGCACTTGATTACTTGCACGTGAACCATATTCTTCATCGCGATGTCAAGTGTTCCAATATATTTTTGACAAAAGATCATAACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTAACTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCTTTGGGATGCTGTATATATGAAATGACCTCGCTTAAGCCTGCATTCAAAGCATTTGATATACAAGCACTGATTAACAAGATTAACAAGTCCATTGTGGCTCCATTACCAACAAAATATTCTGGTGCATTTCGAGGTCTTGTTAAAAGCATGCTACGGAAAAATCCAGAGCTTAGGCCTAGTGCGACAGAGCTACTTGGGCACCGACATCTTCAACCTTATGTTCTTAAGGCCCATCTCAAAATCAATAGCCCTAGGCGAAGTACATTGCCAGGTCATTGGCCAGACTCCAACTACATGAAGAAAACTAGATTTTTGAAGTCTGAAGATGATTCTGTTTCCCTCTCTGGGTATAAGTGGCATTCTTTTAGCTATGATCGGACTTTAAATCCCAGTGTATCAGGAGCAGAGAAAGAATCTCTGTGCTCTACGCTAGAGATAAATTGTACCCCCGATAATTTAAGTCAAAGATTTGCAGAACTTTCCGTTGGAGACAACCACGATGTGAAGTCACTCCATAAGCTAGATGTTTCTAGAACTTCTAGTAATGCCAAGACTCCTAGACTAACTGCATCAAAAGCTTCCGCCATTCATAAGAAATCAACGGTATCCTCGAAGAATCATAAGACGCTTCCTGTTTCGCATAATACAAAACAACCTGGCCATACTACTCGCAGAGCATCATTGCCGTTTCCAAAAAGTTGTTCCATTCATCAGCCTCCTCGCAGACCCAGTATTGGTTTACTTGATCATGTAAATTCACCCAATATTTCAGTTAACTCTCCCCGTATTGATAGGATAGCAGAATTTCCATTAGCGTCATATGAAGATCAATTGTTTCCCATCAATAGATCTCCACCAAACCCGGCACAGGGCTCTTCAGGTTCACCTCCTTGTGGCAATGATTCAACTTTGATAGACAAATGCACAATCAAGGTATGTGACGCATCCTATGTTAGACCAGGATGTACAGATGCTTGGCAGGGAATCAAGCGCTGCATGTTAAAGAAAAATGACAAGGATAAAAGTGGCTCATCTGATCAAAATGCAACTGCTGGAGCATCAAGCCACAACTCTTCAGATTACTGCCACCGACAGTTTGATACTTCGTCATTCCAACAAAGGGCTGAGGCCTTAGAAGGTTTGCTTGAATTTAGTGCAAGATTACTACAGCAGGAAAGGTATGGAGAACTTGGGGTTTTATTAAAACCATTTGGGCCAGAGAAAGCTTCCCCTAGGGAAACTGCTATTTGGTTAAGCAAGAGTTTCAAAGAGAACACCTTCAACCGGGAACAATCCACCTAA	1902	0.4159	YSGEGNLLLFDHMEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHQEMELLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKASGVMFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDHNIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSATELLGHRHLQPYVLKAHLKINSPRRSTLPGHWPDSNYMKKTRFLKSEDDSVSLSGYKWHSFSYDRTLNPSVSGAEKESLCSTLEINCTPDNLSQRFAELSVGDNHDVKSLHKLDVSRTSSNAKTPRLTASKASAIHKKSTVSSKNHKTLPVSHNTKQPGHTTRRASLPFPKSCSIHQPPRRPSIGLLDHVNSPNISVNSPRIDRIAEFPLASYEDQLFPINRSPPNPAQGSSGSPPCGNDSTLIDKCTIKVCDASYVRPGCTDAWQGIKRCMLKKNDKDKSGSSDQNATAGASSHNSSDYCHRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPEKASPRETAIWLSKSFKENTFNREQST	633

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g03251	633	ProSiteProfiles	Protein kinase domain profile.	16	270	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g03251	633	Gene3D	Transferase(Phosphotransferase) domain 1	96	283	-	-
	Pste5g03251	633	MobiDBLite	consensus disorder prediction	544	559	-	-
	Pste5g03251	633	CDD	STKc_Nek	15	265	-	-
	Pste5g03251	633	MobiDBLite	consensus disorder prediction	483	498	-	-
	Pste5g03251	633	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	13	583	-	-
	Pste5g03251	633	Pfam	Protein kinase domain	16	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g03251	633	FunFam	Serine/threonine-protein kinase Nek2	13	95	-	-
	Pste5g03251	633	MobiDBLite	consensus disorder prediction	478	498	-	-
	Pste5g03251	633	SMART	serkin_6	16	270	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g03251	633	MobiDBLite	consensus disorder prediction	399	423	-	-
	Pste5g03251	633	MobiDBLite	consensus disorder prediction	537	559	-	-
	Pste5g03251	633	MobiDBLite	consensus disorder prediction	399	436	-	-
	Pste5g03251	633	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	137	149	IPR008271	GO:0004672\|GO:0006468
	Pste5g03251	633	FunFam	Serine/threonine-protein kinase Nek2	96	286	-	-
	Pste5g03251	633	Gene3D	Phosphorylase Kinase; domain 1	2	95	-	-
	Pste5g03251	633	SUPERFAMILY	Protein kinase-like (PK-like)	13	312	IPR011009	-
	Pste5g03251	633	ProSitePatterns	Protein kinases ATP-binding region signature.	22	45	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g03251	Pste-Chr5	25716748	25722916	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g03251	22	307	MAP Kinase Kinase Kinase	AT1G53570	30.195	7.70e-36	140

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Pste5g03251		Pkinase	3.3e-63	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste5g03251	5	25716748	25722916	Pste5g03251	5	25716748	25722916	ECH
	Pste5g03251	5	25716748	25722916	Pste4g00850	4	6613000	6621529	PCT