Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03247 CAAGTTTGAAATGAATTGAATATACCTTGAATAGCAACGTGGTTGGATTGACTTGTCCAAGGTCACACAATATTTAATTGCGTAAAATACTATCGTTTGGGGGGTGGCCGGTGAGTTCACTTTCTCCTAAAAGGGTGTCGGGGGCTATCTTTTCCTTTTCATGCAAGGACAATCTCCTTGATAAACGCGAGGGAGAGAGAGAGAGAGGGGTTAAGTTTAGCGTTTTGAAAGTTGCTTGCAGCACTGCGCTTATTTACAGTGAACACCAAAGAGAAAGGAAGAGGTAAAGCAGTCCAACACAAACATGTTTGATGGAGCACCCGACCAGTTCCACCAATTCATAGCACCAAGGACCACTCTCCCTCTCCACCATGCCTCTTCAAACCCCCCAAACACCTTCCTACCCTTTGATCCATATAATCCTTCTCATCATCACTCGCCACTACTCCAAACCCATCTGTTGCACCCATTGCACCCTCCTTCTCCCACCCACAAACATCAACAACACAAGCTTCTTCCAATCAACAACGTCTTGCAAAGAGATCAAAGACAATTACCGGAGCTAACCGATTCCTGGACCAACGATGAAGTGCTTGCACTTTTGAGAATCAGATCTACCATGGAAAATTGGTTCCCGGACCTCACATGGGACCATGTCTCCAGGAAGCTAGCAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGTAAGGAGAAGTTCGAAGATGAGAGTAGATACTTGGACAACATTAACTACGGCAAGAGCAATTACCGGTTCCTGAGCGAGCTGGAGGAGCTTTGTCAAAACCCTGATCCGGGTGTTGATGGGGTTGCAGTGAGTGGTGAAAAGACTCACCACCTAGGAGGAGACAACGTGGGCCACCACACTTGCGCATTGGAAGAAAATTCGAGAGACATTGAAACAGCAGCGACCAAACAATGTGATATTGGAAGTGACAAGGTGGAAAAGTCAAAGGAGCGCAAGAGGAAGCGTCGTGATAGGTTCGAAATGTTCAAGGCTTTCTGCGAGAGTGTTGTCAACAAGATGATGGCCCAGCAAGAAGAGATTCACAACAAACTCCTGGAGGACATGGTGAAAAGGGACCAGGAGAAGTTCGCCAGAGAGGAAGCGTGGAAAAAGCAAGAGCTTGATAGGATGAACAAGGAGCTCCACATTATGGCACAAGAGCAAGCTATCGCCGGGGATAGACATGCCACCATTATTGAATTCTTAAAGAAATGTGCATTCACAACCACAACCACAACCACAACCCCTCTCACCCACCCGCAAAACGGAAACCCTAATCATCCTTCCCATGAAGACCACAATCCTAATCTTGACCCAACTCCCTCTCCTAAGATGATTCAAAATCATGACCAAACTGCATTGGGAGCCGAAAACCCTAGCACAAGTGACACGTTATTACAACTTCCTTCTTCCTCCAATTCTTCCCCAACACCCCACAACCCTACTGCTTCTTCGCTCAATAACCATAATAATATTATCCCATTAGAGTCACATTCAGTTTCCGCATACAAGGCAACCTCAACAACCCCTATGGTCAACAGTGAGAGTTCCAAGGATGACGTTGGGAGAAGATGGCCAAGAGATGAAGTGTTAGCACTGATAAACCTAAGGTGCACCAGTGTGAGTAACAACAATGAAGAGAAAGAGGGAAACAAGGGTCCTCTGTGGGAGAGAATCTCGCAAGGGATGTCAGAACTAGGATACAAGAGAAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACCAAAGATGTTAATAAGAAAAGGTCCCTTAACTCTAGGACTTGTCCTTATTTCCATCAACTGAGTTGTTTGTATGGTCAGGGAAAAATTGTGCCACAGTTTGAAAGGGAAGGAAGCCACTTAAGTCCAACCGCGAATTCCGGCCAAGTTCCACGGCCCGATGATCAAGTCCAAGCTGATGAGTCTTCTCAGGTGGGGTCTTCTGGTTTGGTTCAGTATGCATGTTGATCATGCAGGTGAGAAAACTTTGAAATTAAGTCATCTTTTCTTTGGATTGTGATTAATTAGTTTAATATTCATTAATTTGTCCATTTTATATGGCATAATAAGCTCCACTATTTTCCGTTTCTTTTTGCTTTTGAGTGGTGGGAGGACTTTTTTTATATATAGCATAAATTAATTGAATATGTATATTTTGATTTTGGTGAGCACCGACAGCTTCAGGAATTAGAAC 2243 0.4436 MFDGAPDQFHQFIAPRTTLPLHHASSNPPNTFLPFDPYNPSHHHSPLLQTHLLHPLHPPSPTHKHQQHKLLPINNVLQRDQRQLPELTDSWTNDEVLALLRIRSTMENWFPDLTWDHVSRKLAELGFKKSAEKCKEKFEDESRYLDNINYGKSNYRFLSELEELCQNPDPGVDGVAVSGEKTHHLGGDNVGHHTCALEENSRDIETAATKQCDIGSDKVEKSKERKRKRRDRFEMFKAFCESVVNKMMAQQEEIHNKLLEDMVKRDQEKFAREEAWKKQELDRMNKELHIMAQEQAIAGDRHATIIEFLKKCAFTTTTTTTTPLTHPQNGNPNHPSHEDHNPNLDPTPSPKMIQNHDQTALGAENPSTSDTLLQLPSSSNSSPTPHNPTASSLNNHNNIIPLESHSVSAYKATSTTPMVNSESSKDDVGRRWPRDEVLALINLRCTSVSNNNEEKEGNKGPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLNSRTCPYFHQLSCLYGQGKIVPQFEREGSHLSPTANSGQVPRPDDQVQADESSQVGSSGLVQYAC 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03247 570 CDD GT1 430 497 - -
Pste5g03247 570 MobiDBLite consensus disorder prediction 320 337 - -
Pste5g03247 570 SMART sant 87 144 IPR001005 -
Pste5g03247 570 SMART sant 428 492 IPR001005 -
Pste5g03247 570 FunFam Trihelix transcription factor GT-2 91 147 - -
Pste5g03247 570 FunFam Trihelix transcription factor GTL2 432 495 - -
Pste5g03247 570 Pfam Myb/SANT-like DNA-binding domain 89 148 IPR044822 -
Pste5g03247 570 Pfam Myb/SANT-like DNA-binding domain 430 516 IPR044822 -
Pste5g03247 570 MobiDBLite consensus disorder prediction 533 570 - -
Pste5g03247 570 ProSiteProfiles Myb-like domain profile. 431 490 IPR001005 -
Pste5g03247 570 MobiDBLite consensus disorder prediction 347 397 - -
Pste5g03247 570 MobiDBLite consensus disorder prediction 534 570 - -
Pste5g03247 570 PANTHER FI21293P1 58 562 - -
Pste5g03247 570 Gene3D - 432 495 - -
Pste5g03247 570 Gene3D - 91 145 - -
Pste5g03247 570 MobiDBLite consensus disorder prediction 320 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03247 Pste-Chr5 25686668 25689330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03247 91 522 Trihelix Transcription Factor Family AT5G28300 42.424 1.30e-92 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pste5g03247 Myb_DNA-bind_4 1.1e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03247 5 25686668 25689330 Pste5g03247 5 25686668 25689330 ECH
Pste5g03247 5 25686668 25689330 Pste4g00854 4 6660399 6663665 PCT