Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03202 TTTACTGCAAAGTGCAGGGTGGGCATTAATTTGAAGGAGATCAGTGTTAGGGGAATGGGGTGTGTGATTAGCAGACAAGTGTCGAAGGGGATAGTCTCGGGTGAGAACGGTGTTGGTGAGAAGGAAAAGGAGAAGAGTGGCGGTGGAGAAGAGAAGCAGCAGCGGCCTCGCGGCGAAAGGAGAAAGGCGAAGGGCAATCCGAGGCTGAGCAATCCGGCCAACCATTTGCGGGGAGAGCAGGTTGCCGCTGGATGGCCGCCGTGGCTCACTGCAGTCTGTGGGGAGGCTCTCGGTGGTTGGATTCCGCGAAAGGCCGACACCTTTGAGAAAATTGATAAGATTGGGCAAGGAACTTATAGTAATGTCTACAAAGCCAAAGACACCATCACAGGAAAAATTGTTGCCCTAAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTGAAGTTCATGGCAAGAGAGATTCTTATTTTGCGAATGTTGGATCATCCCAACGTTGTAAAGTTGCAAGGTTTAGTTACGTCAAGGATGTCCTGTAGTTTGTATTTGGTGTTCGATTACATGGACCATGATTTGGCTGGACTTGCTGCAAGCCCAGGAATCAGGTTTACAGAGGCTCAGGTAAAATGTTACATGCATCAGTTGCTATCAGGACTTGAGCACTGTCATAACCGTCATGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAATACTTAAAATTGCTGACTTTGGACTGGCATCTATTTTTGATCCAAACCATAAGCATCCCATGACTAGTCGTGTTGTGACCCTTTGGTATCGACCTCCTGAGTTGCTTCTTGGTGCCACGGATTATAGTGTAGGTATAGACCTCTGGAGTGCTGGATGTATTTTAGGAGAGCTATTGGCTGGGAAGCCAATCATGCCTGGCCGTACAGAGGTGGAGCAGCTGCACAAGATATACAAACTATGTGGTTCACCTTCCGATGAGTATTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCACGAGAGCCATACAAGAGACGCATAGGAGAGATATTTAAAGATTTTCCACCTTCTGCTCTACTCCTCATTGATACACTTCTTGCAATTGATCCTGTAGAACGGAAAACTGCCTCAGATGCTTTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGCGATCCTTCTAGTCTTCCAAAATATCCCCCAAGCAAGGAAATGGATGCTAAAAGACGGGATGATGAAATGAGGAGACTGAGAGCTGCAGGCAAAGCTCAGGTTGATGGTCCAAAGAAGCATAGGACACGTGATCGAACTACAAAAGCCTTTGCTGCTCCTGAAGCCAATGCTGAACTTCAATCCAATATTGATAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCGCCGCATCAAGATGGACAACTTGGTTTTCCTTTGGGATCTTCACATCATATTGATCCAGACACTGTTCCTGTTGATATCTCTTTTACATCAACCTCGTATACATATTCAAAGGAACCATTCCAAGCTTGGTCTGGTCCCATTGGTAATGCAGCTGACATTGGAATGCCAAAGCAGAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAGACCACATAAACATGCCCTGAAGGACAAGGTTAAAGGAAAGAAAATCACAGCTTAGATATTAATACATTCTTATAGAGACAATTAAGAATCTGGCTCTGCTGCCTCATTTTTTGGTGCAGCCAAATTGCTGCGCAATGCAATTTTTAAAATGTCCTGCTGCCTGTCCACTACCCTGAGTATAAGTATAATAGCTTCTCATTTCTCAGCAAGGGATAAAATTCATTTTCCC 1887 0.4441 FTAKCRVGINLKEISVRGMGCVISRQVSKGIVSGENGVGEKEKEKSGGGEEKQQRPRGERRKAKGNPRLSNPANHLRGEQVAAGWPPWLTAVCGEALGGWIPRKADTFEKIDKIGQGTYSNVYKAKDTITGKIVALKKVRFDNLEPESVKFMAREILILRMLDHPNVVKLQGLVTSRMSCSLYLVFDYMDHDLAGLAASPGIRFTEAQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGILKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYSVGIDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRRIGEIFKDFPPSALLLIDTLLAIDPVERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEMRRLRAAGKAQVDGPKKHRTRDRTTKAFAAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDTVPVDISFTSTSYTYSKEPFQAWSGPIGNAADIGMPKQKKHTAGDALDLSRPHKHALKDKVKGKKITA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03202 570 SMART serkin_6 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g03202 570 Pfam Protein kinase domain 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g03202 570 MobiDBLite consensus disorder prediction 533 570 - -
Pste5g03202 570 MobiDBLite consensus disorder prediction 36 66 - -
Pste5g03202 570 Gene3D Transferase(Phosphotransferase) domain 1 191 432 - -
Pste5g03202 570 PANTHER CELL DIVISION PROTEIN KINASE 106 396 - -
Pste5g03202 570 ProSiteProfiles Protein kinase domain profile. 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g03202 570 Gene3D Phosphorylase Kinase; domain 1 96 190 - -
Pste5g03202 570 MobiDBLite consensus disorder prediction 540 557 - -
Pste5g03202 570 SUPERFAMILY Protein kinase-like (PK-like) 103 399 IPR011009 -
Pste5g03202 570 CDD STKc_CDK9_like 108 392 - -
Pste5g03202 570 FunFam probable serine/threonine-protein kinase At1g54610 95 190 - -
Pste5g03202 570 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Pste5g03202 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Pste5g03202 570 FunFam probable serine/threonine-protein kinase At1g54610 191 432 - -
Pste5g03202 570 MobiDBLite consensus disorder prediction 34 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03202 Pste-Chr5 25128236 25135238 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03202 100 432 Core Cell Cycle Gene Families AT5G10270 52.722 1.81e-121 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pste5g03202 Pkinase 2.5e-66 CL0016