Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03201 TTCTCAAAGTTTCTAAAATGGGAAGACAACCATGTTGTGATAAGGTAGGGTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTCATGAATTTTATTCTCAACTATGGCATCCATTGCTGGAGAACGATGTGGAAAGAGTTGCAGACTCAGATGGATAAATTATCTGAGGCCAGACCTCAAGAGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAAAATCAAGAAAAAGCTGAAGCTCCTTGGCCTGGACCCTGTAAGCCACAAGCCAATTGAGAAAAAGGAAAATACTGATGAGGACACAAATAAGGGCAATGATGTACAGCCTTCAATTTCTGGAGTGTCTCAAGAAAATATGGAGACTAAGTCATTGGAAAATGATGGCACCAAAGAAATGACAAAAACAGAAGAAAACAAGGTGATCACTTGGGATGATACCACTGAACTTTTGAACAATTTTGAAATGCTATGCTCACAGTTAGACTTGGGATCATGGATGAGCCAAGAAAATACTAGTAGTACTAATTCTTTATGTAGTACTTCTTCTGTGTCTCTGGATGACACTAGTCACCTTTCTATGGATGAATCCTCTTACATAAAGGAAAACTCCTTGCAGCAATGGCTCTTCAGCAACATCCTTTCAGTGCCACCACGTGTGGCTGAAGATTGCAGCGGCATGATAATATTGTCACTTTTTCTTGTCTCCTCTAATCATTGGTTTTAT 734 0.3978 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNYGIHCWRTMWKELQTQMDKLSEARPQERTDNEIKNHWNTKIKKKLKLLGLDPVSHKPIEKKENTDEDTNKGNDVQPSISGVSQENMETKSLENDGTKEMTKTEENKVITWDDTTELLNNFEMLCSQLDLGSWMSQENTSSTNSLCSTSSVSLDDTSHLSMDESSYIKENSLQQWLFSNILSVPPRVAEDCSGMIILSLFLVSSNHWFY 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03201 239 ProSiteProfiles Myb-like domain profile. 9 72 IPR001005 -
Pste5g03201 239 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 42 - -
Pste5g03201 239 MobiDBLite consensus disorder prediction 101 120 - -
Pste5g03201 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 76 IPR017930 -
Pste5g03201 239 MobiDBLite consensus disorder prediction 83 122 - -
Pste5g03201 239 CDD SANT 16 70 IPR001005 -
Pste5g03201 239 SMART sant 13 74 IPR001005 -
Pste5g03201 239 MobiDBLite consensus disorder prediction 83 100 - -
Pste5g03201 239 Gene3D - 11 77 - -
Pste5g03201 239 Pfam Myb-like DNA-binding domain 14 70 IPR001005 -
Pste5g03201 239 SUPERFAMILY Homeodomain-like 8 78 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03201 Pste-Chr5 25126192 25128524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03201 1 154 MYB Transcription Factor Family AT5G16600 35.678 3.09e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pste5g03201 Myb_DNA-binding 2.4e-08 CL0123