LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g03195	ATGGAGTGTAACAAGGATGAGGCTATGAGGGCTAAGCAGATTGCTGAAAATAAGATGCAATCTGGTGACTTTCAAGGGGGCCTGAAATTTGCTGTGAAAGCCCAAAGGCTGTTTCCTGAGATTCAGAACATTGTTCAGATCCTTACTGTTTGTCAGGTTCACTGTGCTGCACAGAAGAAACACTCTGGGTCTGAAATGGACTGGTATGAAATTCTTCAGATTCAACAGTCTGATGATGAAGCAACAATAAAGAAACAGTATAGGAAGCTTGCACTGCTACTTCATCCTGATAAAAATAAAGCTGCTGGTGCAGAGGCTGCTTTCAAGTTGATTGGTGAAGCTAACAGAGTGTTGGGTGACCAAACAAAGCGTACTTTGTATGACTCGAAGTTGGGAGTTCCTGTTGGAAATACAGCAGCTAAGGTTCCACCTTGTCACCCAAATGGAAATGCTTTTGGGATGAGATGTGATGGAACTGCTAGAAATTATCAGAACAGTTTTTCTTCACAATCCCAGGGTTGGAATGCATATCATCGGGCTGAAAATGAGACATTCTGGACATGTTGCCCACATTGCAATACTAGATATGAATATTTCAAAACCATATTAAATCATACCATACGTTGTCAACATTGTTCTAAATCCTTTACAGCTCATGATATGGGGAACCACAATGTGCCACCAGGATATTGGTCACGTTTTAATAACGAGAAAGAGCCTCCAAAACATGCATCATCGAAAGAAGCATCGAAAAGCAATGGTGTAAAATCTTCTGGTAGAAAACAGGAGGGTGTATCCATGTCAAAGCGTTCTGCCGGTATTGGTGCCTATTCAAAAGCTGCAAAGAGCAGAGATGACCATGTGGATGCAGGAGTGAAAAAGGCTGGTGTTGGAATGCCCAACTCCACTAATGCCAAAGCCAAGGCATCGCAAGCCCCAACAAAGATTGGACTCAAGAGAGCAAGGCAGTCAGAATCAGATGATGATGATAACAAAACTGGAAATGGTAAAGGCATGAAAGATACCAAGGTTCGAGAAGATAGGGTTGATCCTAATAGTAGATTTTCAAGGAAAAAGCAGCATGTTTTGCACACAGAAACTGATAAAGATGTTGATTTTGGGAATTCTTCCAAAAGGCCGCGACATAATGAATCATTTACCACACCTGAAGAGGAGAAAAGAAAAGTTCCCACAACTGCTGGTATGGCCAATCAGAATGGAGAGATAAGAAATAAAGCAAGTGCACCTCCTGAAGAAACAGTTTTAAGGAATACAACCAAAGCTGAGCAGACAAATGTGCTGAAAAAGGAGGCTTCCAATTCAGGTCTTAATGACGGAAAGTCTAAAGCTGACAATTGTTCTCCACTGAAGTCAAACTTACCTCCCAGTTCAGAGATTTGCTGTCCTGATCCAGATTTCAGTGATTTTGAGAGAGACAAGGCCGAAGATTGTTTTGCTGTTAATCAGATATGGGCTGTTTTTGATACTACCGATAGTATGCCAAGATTTTATGCAGTTATCAAGAAAGTGTACTCCCCTTTCAAGTTGCGGATTACTTGGCTGGAACCTGACTCAAATGACCAAAGTGAGATTAACTGGCATGTAGCAGGTTTGCCTGTTTCTTGCGGTAATTTCCGACTTGGTCATTCTCAGATAACTTCAGATCGTTTTATGTTCTCTCATCAGATGCATTGCATAAAAGGAAGTGATACCAGTACTTATCTGGTGTATCCAAAGAAGGGAGAGACTTGGGCTGTTTTCAGACATTGGGATCTTGGATGGAGTTCTAATCCAGAAAACCATTCAGAGTATCAATTTGAATATGTGGAAGTTCTATCTGATTTTGATGAAAATGATGGCATTAATGTTGCTTGTCTTGGCAAACTGGATGGGTTTGTTAGTCTCTTTCAGCGAACTGTGCTGAACGGAATCAGCTTATTTTGTATTTTGCCTAATGAGCTATATAAGTTCTCACATAGGATTCCTTCATATAAGATGACAGGTGCTGAAAGGGAAGATGTTCCTAGAGGATCTTTTGAACTTGATCCTGCTGGTCTGCCAAATAGTCTTTTTGAAGTTGGTGATCCTTGTCTTGCGAAGAGGGATGAAGTCAATTGTTCGCACCATGAATATTCAAAGTGTAAAGTTGAGCAAGCAGTGCCTAATGATAGTCGTCTTCACAAAGCGAAATTACGAGAGAGTATTGATGCTGAAAGAGTAGCACAAATCCTCAGAAGATCGCCAAGGTCAAGTAAGAAAAGTAAGGACAATGGTCAAGTTAGCACTAGTCCATATATGGTCAGAAAGGATAACATAGACATTGGCCACGGGGATAACAATCCGTCAGAGGGAAACGCTGCTGCATCTCAGATTAATGAGAGGAAGGTCAAGACACCTCAGAAACACGAGAAAAACAATTGTAGAGAACCATTGAAAGCACGTAAGTCACCTAGAGATTTAAGTAAGAAAAATGCTCAAGGAGATGCAGGTGAATGGACAACTGGCAAGTTGACTGATAATCATTCAAACAAGAAAAATGTGAAGGGCAGCAATATTCCTCAGCCGGTGGGAGCATCATGTTATGGCTTTAAGAAGGAAAAATCTCAAGAGATGTTTCAGTGTGGTCAGATATGGGCAATATATGGTGATAGGGATCATATGCCCGATACTTATGCTCAAATTAAGAAAGTTGTATTCACTCCTAATTTTAGATTGCAGGTGTCGATGCTTGAACCCTGTTTGCCACCAAATGACTTAAAAAGAACTATATCTTGTGGCATCTTTGAAGTTAAAAGAGCTAAATTACAGATTCTTTCCCTCTCTGCATTCTCTCATCAATTAAAAGTTGAACCCATGGTCAATAGTAGATATGAAATTTACCCTAGAAAAGGTGAGATTTGGGCTCTATACAAGGACCAGAACTATGAACTGGTTTCTTCAAATCACAGCAGAGGTGAATGTCATATAGTAGAAGTATTAGCAGATAGTGACAAGAGTATACAAGTAGTTGTTCTGATGCCACATAGCAACTCTCGGACAATTTTCAAGGCTCCTAGAATTCAGAGATCTAAAACTGGTGTAATGGAAATACTAAGAGAAGAGGTAGGCAGATTTTCACATCAGATTCCTGCTTTTCAGCATAGTGAAAATATTCATCTCAGAGGGAAACCTATGTTTCGTTATATGATTAAACCAGAGGCTGCAACTTATGGAAATTTGTTCAAAAGATTTCCTCATTCCATGTTTTGTTCAGCTACATTAGTTGTAGCAGCTCTTATTACATTGTAG	3288	0.4015	MECNKDEAMRAKQIAENKMQSGDFQGGLKFAVKAQRLFPEIQNIVQILTVCQVHCAAQKKHSGSEMDWYEILQIQQSDDEATIKKQYRKLALLLHPDKNKAAGAEAAFKLIGEANRVLGDQTKRTLYDSKLGVPVGNTAAKVPPCHPNGNAFGMRCDGTARNYQNSFSSQSQGWNAYHRAENETFWTCCPHCNTRYEYFKTILNHTIRCQHCSKSFTAHDMGNHNVPPGYWSRFNNEKEPPKHASSKEASKSNGVKSSGRKQEGVSMSKRSAGIGAYSKAAKSRDDHVDAGVKKAGVGMPNSTNAKAKASQAPTKIGLKRARQSESDDDDNKTGNGKGMKDTKVREDRVDPNSRFSRKKQHVLHTETDKDVDFGNSSKRPRHNESFTTPEEEKRKVPTTAGMANQNGEIRNKASAPPEETVLRNTTKAEQTNVLKKEASNSGLNDGKSKADNCSPLKSNLPPSSEICCPDPDFSDFERDKAEDCFAVNQIWAVFDTTDSMPRFYAVIKKVYSPFKLRITWLEPDSNDQSEINWHVAGLPVSCGNFRLGHSQITSDRFMFSHQMHCIKGSDTSTYLVYPKKGETWAVFRHWDLGWSSNPENHSEYQFEYVEVLSDFDENDGINVACLGKLDGFVSLFQRTVLNGISLFCILPNELYKFSHRIPSYKMTGAEREDVPRGSFELDPAGLPNSLFEVGDPCLAKRDEVNCSHHEYSKCKVEQAVPNDSRLHKAKLRESIDAERVAQILRRSPRSSKKSKDNGQVSTSPYMVRKDNIDIGHGDNNPSEGNAAASQINERKVKTPQKHEKNNCREPLKARKSPRDLSKKNAQGDAGEWTTGKLTDNHSNKKNVKGSNIPQPVGASCYGFKKEKSQEMFQCGQIWAIYGDRDHMPDTYAQIKKVVFTPNFRLQVSMLEPCLPPNDLKRTISCGIFEVKRAKLQILSLSAFSHQLKVEPMVNSRYEIYPRKGEIWALYKDQNYELVSSNHSRGECHIVEVLADSDKSIQVVVLMPHSNSRTIFKAPRIQRSKTGVMEILREEVGRFSHQIPAFQHSENIHLRGKPMFRYMIKPEAATYGNLFKRFPHSMFCSATLVVAALITL	1095

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g03195	1095	Pfam	Domain of unknown function (DUF3444)	860	1049	IPR024593	-
	Pste5g03195	1095	Pfam	Domain of unknown function (DUF3444)	464	670	IPR024593	-
	Pste5g03195	1095	SUPERFAMILY	Chaperone J-domain	63	131	IPR036869	-
	Pste5g03195	1095	MobiDBLite	consensus disorder prediction	795	825	-	-
	Pste5g03195	1095	MobiDBLite	consensus disorder prediction	827	851	-	-
	Pste5g03195	1095	MobiDBLite	consensus disorder prediction	229	457	-	-
	Pste5g03195	1095	MobiDBLite	consensus disorder prediction	247	265	-	-
	Pste5g03195	1095	MobiDBLite	consensus disorder prediction	418	457	-	-
	Pste5g03195	1095	Pfam	DnaJ domain	67	128	IPR001623	-
	Pste5g03195	1095	CDD	DnaJ	67	120	IPR001623	-
	Pste5g03195	1095	Gene3D	DnaJ domain	52	139	IPR036869	-
	Pste5g03195	1095	MobiDBLite	consensus disorder prediction	742	851	-	-
	Pste5g03195	1095	MobiDBLite	consensus disorder prediction	320	397	-	-
	Pste5g03195	1095	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Pste5g03195	1095	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Pste5g03195	1095	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Pste5g03195	1095	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-
	Pste5g03195	1095	PANTHER	DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED	1	1053	-	-
	Pste5g03195	1095	SMART	dnaj_3	66	123	IPR001623	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g03195	Pste-Chr5	25014927	25018312	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g03195	4	228	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	33.478	2.23e-28	116

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste5g03195	5	25014927	25018312	Pste5g03195	5	25014927	25018312	ECH
	Pste5g03195	5	25014927	25018312	Pste4g01003	4	7767271	7768841	PCT