Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03180 CTATGGATCTCGCCCAGAACAACCAAGTGTTAGCTATCATAGGCACAATAACACACAATGAAGCAATTTTGGCAAGTGAATTTAATGACACTATGAAAAATATTCCCATCTTGTCTCTAATTCCACCTACCACCGAATCAGAGCAATTATCTCCTTTATTGCCACACTTCATCCAAATGGGAATTGATATCAATATTCATATGCAATGCATGGCAGCCATTCTAGGAGAATTCAGATGGAGAAAGGTGACAGTAATCTATGAACTTGATAATTGGTTTTCCTCTAATCCAGGGATGCTACTCAACCTCACCTATGCTCTTAGACTTGTTGGTTCTGAGATTGATAATCATTTAGCTTTGCCTTCATTGTCCTCTCTATCAAACCCAAAATCCACCATTGAAAATGAGCTTAAAAGTGTCAAAAGAAAAAGTAACAGGGTTTTCTTGATTGTGCAATCTTCTTTGGAGTGGGCCAACATACTTTTTGAAAAAGCAAATCAAATGGGTTTGATGCAAAAGGGTTGTGTGTGGATTATTCCACATGGGGTTGCTGGCCTTCTTGATTCAGTTAACTCATCTATTATCCTTAACATGCAAGGAGTTGTTGGATTTAAGACACACTTCATGGAAACAAGTGAGGCATTTAGGAGGTTCAAATACAAATTTAAAAGAAGGTTTGCATTGGAGTTCCCTGAAGAAGAGAACATTAATCCAAGTTTCTTTTCACTTCAATCTTATAATGCAACCAAGGCAATTGCTCAAGCTGCAAGGGAATCACAAGGGAAATTAACCTTGGAACAATTATTCAAAAGTATTATCTCCATAAGTCGCAAATTAAGACAGCCACCCACATTCAATATAATTAATGTGATAGGTAAAAGTTATAGAGAATTGGCATTATGGTCTCCAGCAGTAGGTTTCTCCACAAACCTTGTTACACAACAATTGACAAATATAAACACAAACATTGGAATTTTGAGTACAGTTTATTGGCCTGGAGGTATACCATTTGTTCCTAAGGGGTGGACTCGTAGCATTGAAAACAGGAAATTGAAAATAGGAGTTCCTGCTAAAGGTGTCTTCACTGAGTTTGTGAATGTGGCATATGATAACAAGAGTAACCTTTCTTACACAGGATTCTCTATTGATGTCTTTAAAGCAGCCATTCATAATTTGCGTTATAATTTGGATTTTGAGTTTGTTCCCTTTAATGGGATTGACTTCTCACAACCATACATTGAATCTGGCATTGACATGGTGGTTACAGAGCAGCCAGTTAAATCAAAAGAAACATGGAGTTTTTTAGAAGTCTACACAAAAGAGATGTGGTTGATGATGACAGCATTGCACATTTTTGTGGTATTGGTCATGTGGTCGATTGAAAGGCAAGTGAATGAAGAACTAAAAGGATTGGGATCCATGCTTTGGTTCTTAGTTACTGTAATATTCTACGTACACGGAGAACAAATTAAAAGTCCCTTGGCTCGAATTGTGTTGGCACCATGGTTATTTGTGATCCTCATTGCAAGTAGTTATTTCACAGCAAGTTTAACTTCCATGATGACTGTTTCACAACTAGAGCCATCTGTGGTAGATATACAGACCCTTCTGAAAAGAAATTCTCCAGTTGGTTGTGATGGAAATTCGTTCATTGTGAAGTATTTGATCGAGGTACAAAAATTCAAGCATGAGAACGTTAGGAACTTTACGTCCATAAATGACTACGCTACAGCCTTCCAAAATAAGGATATTGCTGCTGCATTCTTTATTTCACCTCATGCTAAGGTTTTTTTGGCAAAGTACTCATGCAGAGGTTTTACCAAAGCAGGAAACACTTTCAGGCTTGGTGGCTTAGGTTTTGTGGGAGGCAATACTAGTTGTTCTCCTTTAGAGAGCAAGGCAAAAGATGGGTCTACAGGATTTCAGCCTTTCCTTGGCCTATTTTGTGTGTGTTCTATTGTTGCTATTCTGGCACTGTTATATAATATGACTTGTTTGTTGATGAATAATATAGAGACCACTTTAACACAATTAAGGAGAATATGGAGATGCCTAACTACATATTTGACTCAGATACGATCAAGACTCAAATCAAGAAGTATGAGAAGTGTAAGAACTGACACAGAAACAAGAAATATTGAGCTTATGGATATAGTTTTTGCTGGCCATGCTCCC 2174 0.3749 MDLAQNNQVLAIIGTITHNEAILASEFNDTMKNIPILSLIPPTTESEQLSPLLPHFIQMGIDINIHMQCMAAILGEFRWRKVTVIYELDNWFSSNPGMLLNLTYALRLVGSEIDNHLALPSLSSLSNPKSTIENELKSVKRKSNRVFLIVQSSLEWANILFEKANQMGLMQKGCVWIIPHGVAGLLDSVNSSIILNMQGVVGFKTHFMETSEAFRRFKYKFKRRFALEFPEEENINPSFFSLQSYNATKAIAQAARESQGKLTLEQLFKSIISISRKLRQPPTFNIINVIGKSYRELALWSPAVGFSTNLVTQQLTNINTNIGILSTVYWPGGIPFVPKGWTRSIENRKLKIGVPAKGVFTEFVNVAYDNKSNLSYTGFSIDVFKAAIHNLRYNLDFEFVPFNGIDFSQPYIESGIDMVVTEQPVKSKETWSFLEVYTKEMWLMMTALHIFVVLVMWSIERQVNEELKGLGSMLWFLVTVIFYVHGEQIKSPLARIVLAPWLFVILIASSYFTASLTSMMTVSQLEPSVVDIQTLLKRNSPVGCDGNSFIVKYLIEVQKFKHENVRNFTSINDYATAFQNKDIAAAFFISPHAKVFLAKYSCRGFTKAGNTFRLGGLGFVGGNTSCSPLESKAKDGSTGFQPFLGLFCVCSIVAILALLYNMTCLLMNNIETTLTQLRRIWRCLTTYLTQIRSRLKSRSMRSVRTDTETRNIELMDIVFAGHAP 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03180 724 Gene3D - 426 570 - -
Pste5g03180 724 FunFam Glutamate receptor 430 563 - -
Pste5g03180 724 Pfam Ligand-gated ion channel 439 652 IPR001320 GO:0015276|GO:0016020
Pste5g03180 724 Gene3D - 63 236 - -
Pste5g03180 724 Pfam Receptor family ligand binding region 3 262 IPR001828 -
Pste5g03180 724 Gene3D - 342 405 - -
Pste5g03180 724 FunFam Glutamate receptor 66 235 - -
Pste5g03180 724 SUPERFAMILY Periplasmic binding protein-like II 324 620 - -
Pste5g03180 724 SUPERFAMILY Periplasmic binding protein-like I 1 341 IPR028082 -
Pste5g03180 724 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 405 668 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03180 Pste-Chr5 24880274 24884240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03180 3 619 Ion Channels AT5G11210 28.571 1.52e-76 261