Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03157 CCTTTAAAGGCTCAAAAACACTCCTTTATAGCATGCAACTTAGCACTTTTCACCTTCATCTTGTTCTTCTTTCAGGGCACCCACATCCAAATACTGTGCATGTGTTTGTCTGAGGGAGAGAGAGGCATGGCACTAGAAGCAGTAGTATATCCCAAACCACAAGACCCGTTTGGCTATGCAATCAAAGACCCATACGACTACAACAACTTGTTAGAAGGTGGAGGTGGCAACTGGGGCTATGCAGATTTCAACCTTGACAAAGAAGACCAAACTTGTGTCACTTTACTGGAGAACCAAACTGAAAATTATCCTTATGGAGAATGGAACTGTTCTCCGCCATCCATGCGCAGAACCAAAAGCAGAAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGAGTACCTCTCTGTTCTTCGCTCTCTAATGCCTGAATCTTATGTCCAAAGGGGTGATCAAGCATCTATTATTGGGGGTGCTATCAACTTCGTTAAGGAGCTTGAGCAGAGGCTACAATTTCTTGGGGCTCAGAAAGAAAAGAAGGGGAAATCTGATGTGCCCTTTTCTGAGTTCTTCTCGTTTCCACAGTACACAACAAGTGCCAGTGGTGGCTGCGATAACTCAGCAGCCATGAGTGAGCAGAAGGGTGATGTTCAGTGTGGGATTGCTGACATAGAAGTGACAATGGTAGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATAGTCTCCAGTTTGCATGGCATGCGTCTCACAATCTTGCATCTGAATGTTACCACCACTGGGGAAACTGTCCTCTATTCTCTCAGTGTTAAGGTGGAAGAAGATTGCAAGCTGGGATCGGTGGATGAGATAGCTGCAGCAGTATACCAAATGCTGGATAGGATTCAACAAGAGTCAATCTTGAATTGAGATCTGAAGTTTAGCTAATTCGGCCCATTTTTTTTAACCAGATCAAGAAGATCTTATTATATTTCTTCTTTTTTTTTTTTTTTTCAAGTTGTACCTAATTATTGAAACGGCTGTTCATCCTGATGTTAATCTACTGAAGCACCTTGATCGAGGTGGGGTCCTTGGAGGAAGTTTTGGTTTATTCCTTCTTACATTGTCTTTCTAGCTAGCTCTATTTTTGATCGTTCCCTCTTCTCTGTCTCTCTCTCTGTACTTTGGGTAGAGATTAGAGAAGGCTCTAGTGTATCACTGTATTGTGTTTGAGACGCATTGAAGTGCTCGGTCAATTCTGCCTACCTAGCTTTAATAGTGGTAGGCCATCTCAATCTCAAACATTAGCCAATTTGTCAAGCCCCAATTCAGAATATCTCAAAGTAACTTTGAATGAAAAAGAAAGCCAAAGATTTTAGG 1425 0.4218 PLKAQKHSFIACNLALFTFILFFFQGTHIQILCMCLSEGERGMALEAVVYPKPQDPFGYAIKDPYDYNNLLEGGGGNWGYADFNLDKEDQTCVTLLENQTENYPYGEWNCSPPSMRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKKGKSDVPFSEFFSFPQYTTSASGGCDNSAAMSEQKGDVQCGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTGETVLYSLSVKVEEDCKLGSVDEIAAAVYQMLDRIQQESILN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03157 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 180 IPR011598 GO:0046983
Pste5g03157 324 CDD bHLH_AtFAMA_like 132 203 - -
Pste5g03157 324 Pfam Helix-loop-helix DNA-binding domain 130 181 IPR011598 GO:0046983
Pste5g03157 324 SMART finulus 135 186 IPR011598 GO:0046983
Pste5g03157 324 Gene3D - 119 196 IPR036638 GO:0046983
Pste5g03157 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 194 IPR036638 GO:0046983
Pste5g03157 324 PANTHER MAX DIMERIZATION, MAD 116 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03157 Pste-Chr5 24705370 24707335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03157 43 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.518 2.47e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g03157 HLH 8e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03157 5 24705370 24707335 Pste5g03157 5 24705370 24707335 ECH
Pste5g03157 5 24705370 24707335 Pste4g01038 4 7997648 7999390 PCT