Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03147 ATGACAACCGCAATGAACGGGACAAAGACAACAGAGACCGCAGAGATACAGGGAGGTTCTGGATTCTCAGTGTTTGCGGAGCGCAGCATCTTCTCTTTAGGAAGATTTTCTCGCGTTTCCAGGCGCCCGTTGCCTGCTTTAATGCTTTTTGCATATCAAGAAAATGTCACGCCCGCACCCTTCTTGCATGTGCAAGAAGCTCATGCGTTTTCCATCACAATGGATCATCAAGGGCATGGCCAGAACCCATCTATGGGAGTTGTTGGTAGTGGAGCCCAATTAACATATGGTTCTAACCCATATCAGCAAGGCCAAATAACTGGCCCACCAGGATCTGTTGTGACATCGGTTGGGACCATTCAATCAACTGGTCAACCTGCTGGAGCTCAGCTAGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAGCAGCAGCACCAACTCCAGCAACAGCTCCAACAATTCTGGTCTAATCAGTACCAAGAAATTGAGAAGGTTACTGATTTCAAGAACCATAGTCTTCCGCTGGCGAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCAGCAGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAAAATGATATTGCTGCAGCAATCACAAGGACTGACATCTTTGATTTCTTGGTTGACATTGTTCCTCGTGAGGACCTGAAAGATGAAGTGCTTGCATCAATCCCTAGAGGGACCATGCCTGTTGCAGGGCCTGCTGATGCACTTCCATACTGCTACATGCCACCTCAGCATGCAACTCAAGTTGGAACTGCTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAACATGTATGCTCAGCAGTCTCACCCCTACATGGCACCACAAATGTGGCCCCAACCACCAGACCAACGACAGTCATCCCCAGAACATTAG 1002 0.4711 MTTAMNGTKTTETAEIQGGSGFSVFAERSIFSLGRFSRVSRRPLPALMLFAYQENVTPAPFLHVQEAHAFSITMDHQGHGQNPSMGVVGSGAQLTYGSNPYQQGQITGPPGSVVTSVGTIQSTGQPAGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHATQVGTAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQSSPEH 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03147 333 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 174 237 IPR003958 -
Pste5g03147 333 Gene3D Histone, subunit A 136 252 IPR009072 GO:0046982
Pste5g03147 333 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 133 271 - -
Pste5g03147 333 FunFam Nuclear transcription factor Y subunit gamma 139 252 - -
Pste5g03147 333 SUPERFAMILY Histone-fold 146 246 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03147 Pste-Chr5 24504640 24510522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03147 74 320 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.694 2.23e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pste5g03147 CBFD_NFYB_HMF 8.8e-18 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03147 5 24504640 24510522 Pste4g01056 4 8162653 8164462 ECH
Pste5g03147 5 24504640 24510522 Pste5g03147 5 24504640 24510522 ECH
Pste5g03147 5 24504640 24510522 Pste4g01056 4 8162653 8164462 PCT