Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03140 TGTGTTTCTTTGTTTCTTCTGTTTTACCAAAGCAATGGAGAACAAAAGAATGGAAGAACAAAAACGCAGTCCTAGAAAGCAGAAGCTAGCATTGGTAGATTCCAATGGCCAAAACTTGGCGACCCTTTTGAGTCCGAGGTTCAAATCTGCAGCTGCTATGGCGGGTTGGGATGAAGAAGCACTGTTGTTGGCTAGTCTTGTGGTTGAGGACACACCAGATAGAGATTCCAAGCATAAGAAACGCTATGTTTTGCACTCCAAAACCCCTCCCACTAACTCATCAAGGAAACGCAGAGCTCTGAGGACTCCAAAAGCACGAAACCCTGTAACTTTTCTTGATCTTGATGCAGAAGAAACTCCAAGAAAAGATAGTGGGAGAAAGAAGGAGGGAAAGAAATCTTGTGTTGATAATGAGGGAAGCAAAGTAGAAGAGGTGGGGAATGAATTGAGAGAGAAGAACCAGGGTGCCCCTTCTTCTGGTTCTGCACTTCCCTGCATTGATAAACTAAGGGATGAGCTTTCCTGTGCAATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGTTTCTGTAGAAAATGTCTGCGATCTGCTGCAGACAAGTGTGGCAAAAAGTGCCCAAAATGCAGGCAGTTAATAAGCAATGGACGATCTTGCACTGTGAACACAGTTCTCTGGAACACAATTCAGCTCCTGTTTCCCCAAGAAGTTGAAGCAAGAAAAGCAGCTAGTGCCTCGAAAGGTCGCCAACAAGTTCAAAATCTGAGTCCAGAAACAGCATTTTTTGATAACTTAAGGAATAGCACACAGCCAAGGGGGGCACCAAGCAGAAGCATGAGGAGGAGTGGGGCAACAGCATCAACAACACAGGATGATGAGGATGCTGCATTGGCTAGAAGGTTGCAGAGAGAAATTGATGAGCAAAGTCCCGAAACAACTCGAATTCGGGCTGCAAGAGTGAGAGCAAGAAGAGGGGTTTCTACTGGCCAACATGAGGATGCAGCTTTGGCTCTAAGGTTGCAAAGAGAAGAGTTCTTGCAAACTTTTAGGGGGAGCAACCAGGACCAATCTAACAGGCTTCCTTCGTCGTCATTAGCTAGAGCAAATTTGAGGGCTATGGCATCTAGAGCCATGAATCTTCGGATTAGTGAAAGAAGAAGATAATCTTAGACAAGGGTGAATGAGTGTATAGAAAAAAATTGCAGGTACAGCCTGCCCTATATGAATTAAACAGCC 1249 0.4484 MENKRMEEQKRSPRKQKLALVDSNGQNLATLLSPRFKSAAAMAGWDEEALLLASLVVEDTPDRDSKHKKRYVLHSKTPPTNSSRKRRALRTPKARNPVTFLDLDAEETPRKDSGRKKEGKKSCVDNEGSKVEEVGNELREKNQGAPSSGSALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKAASASKGRQQVQNLSPETAFFDNLRNSTQPRGAPSRSMRRSGATASTTQDDEDAALARRLQREIDEQSPETTRIRAARVRARRGVSTGQHEDAALALRLQREEFLQTFRGSNQDQSNRLPSSSLARANLRAMASRAMNLRISERRR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03140 380 MobiDBLite consensus disorder prediction 237 287 - -
Pste5g03140 380 MobiDBLite consensus disorder prediction 1 17 - -
Pste5g03140 380 MobiDBLite consensus disorder prediction 69 92 - -
Pste5g03140 380 PANTHER UNCHARACTERIZED 323 372 - -
Pste5g03140 380 MobiDBLite consensus disorder prediction 1 24 - -
Pste5g03140 380 MobiDBLite consensus disorder prediction 104 139 - -
Pste5g03140 380 Pfam Zinc finger, C3HC4 type (RING finger) 164 202 IPR018957 GO:0046872
Pste5g03140 380 ProSiteProfiles Zinc finger RING-type profile. 164 203 IPR001841 -
Pste5g03140 380 SUPERFAMILY RING/U-box 156 227 - -
Pste5g03140 380 ProSitePatterns Zinc finger RING-type signature. 179 188 IPR017907 -
Pste5g03140 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 233 IPR013083 -
Pste5g03140 380 MobiDBLite consensus disorder prediction 60 150 - -
Pste5g03140 380 MobiDBLite consensus disorder prediction 239 285 - -
Pste5g03140 380 SMART ring_2 164 202 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03140 142 218 RAD5 or RAD16-like Gene Family AT5G43530 37.349 1.15e-07 52.0