Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03129 CATAAACATGACAAGGACGCGAGAGAGAGAACCAAGAGAAAAGCTTTTCATCACACTTCACTTTCTTCTTCTGAGTCCCACCTCTACTTAAGACGTAAGGGTTCAATCAGCTATCTGAAAGCCTCAACACAAATTTTAAACAATTGGTCCTTTGACCATACCCATTTGAAGATGGCTTTGATTCAGCTTAAAATCGAACAAAAAGATGGTTACTTGAGCCATCCACCACCAGGTTTGCCTCCTTCTTCACCCCCATTTTGGGGTGCATTCCACAAAGAACCAATGTCTTCATCATATGGTGCTGGTAGAATTAGTCCTGCTGTGGTTTTCACCATAGTGGTTCTGGCTGTTCTATTTTTCATCTCTGGCATGCTCCACCTGCTTGTTAGATTTCTCATGAAGAACCCTTCTTCCTCAATCCAATCCAATAGGCACCAGGAAGTTGAAACCTCTGATGATGCTCTTCAGAGGCAGCTGCAACAGCTTTTCCATCTCCATGACTCAGGTCTGGACCAGGCTTTCATTGATGCACTTCCTGTGTTCCAGTACAAGGAGATAAAGGGGTTGAAGGAGCCATTTGACTGTGCTGTTTGTCTCTGTGAGTTTTCTGAAAAGGATAATCTCAGGTTGCTCCCTATGTGTTGCCATGCCTTTCATATCAGTTGTATAGATACCTGGCTTTTGTCAAACTCTACATGCCCCCTTTGTAGGGGAACCCTCTTCAGTCCTGGCTTTTCTGTTGAAAATTCAATGTATGGTTTTGATGATTTGAGGGATGATGAGGGGTGCCCTTGTAATGGTGAAAATGAATTCACAACTAGGCAGAAAAAAATGGTTGAAATTGAAGAAACTGTGGTGGAGAAGGGAGTTTTCCCAGTGAGACTTGGTAAATTCAGAAGGCTTGATGTGGAAGAAGTGGAGGCTGGAGGAGGAGAAACCAGTAGCAGTAATTTGGATGCAAGAAGATGTTACTCCATGGGATCTTACCAATATGTGCTTGGCAACTCCAACCTGAGGATAACTCTGAGTCATGACCATGCAAATGGAACAGAAAACATTGAGAAGCCTTCACTTCAGGGGGATATTGAAGGAAAGAAGATTACTAGTGTTTGTAAAGGTGAGAGCTATTCTGTTTCCAAAATTTGGCAGTGGTCAAAAAAGGGAAAGTTTTCAGTTTCCTCTGATTTAGCTGTGATGTGGGCCGTGGGATCACTTTTCTTACACTTCTCATTTGCCAATTTTGAAATT 1248 0.4263 HKHDKDARERTKRKAFHHTSLSSSESHLYLRRKGSISYLKASTQILNNWSFDHTHLKMALIQLKIEQKDGYLSHPPPGLPPSSPPFWGAFHKEPMSSSYGAGRISPAVVFTIVVLAVLFFISGMLHLLVRFLMKNPSSSIQSNRHQEVETSDDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIKGLKEPFDCAVCLCEFSEKDNLRLLPMCCHAFHISCIDTWLLSNSTCPLCRGTLFSPGFSVENSMYGFDDLRDDEGCPCNGENEFTTRQKKMVEIEETVVEKGVFPVRLGKFRRLDVEEVEAGGGETSSSNLDARRCYSMGSYQYVLGNSNLRITLSHDHANGTENIEKPSLQGDIEGKKITSVCKGESYSVSKIWQWSKKGKFSVSSDLAVMWAVGSLFLHFSFANFEI 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03129 416 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 101 382 - -
Pste5g03129 416 FunFam RING-H2 finger protein ATL46 157 242 - -
Pste5g03129 416 SUPERFAMILY RING/U-box 174 243 - -
Pste5g03129 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 242 IPR013083 -
Pste5g03129 416 ProSiteProfiles Zinc finger RING-type profile. 195 237 IPR001841 -
Pste5g03129 416 CDD RING-H2_EL5-like 194 237 - -
Pste5g03129 416 Pfam Ring finger domain 194 237 IPR001841 -
Pste5g03129 416 SMART ring_2 195 236 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03129 Pste-Chr5 24363337 24365846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03129 103 389 C3H Transcription Factor Family AT2G18650 41.265 2.78e-59 197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03129 5 24363337 24365846 Pste5g03129 5 24363337 24365846 ECH
Pste6g02293 6 10993394 10994604 Pste5g03129 5 24363337 24365846 ECH