Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03110 ATGGCCTCTTCTAGCTACTCTAACTCTCCATGTGCAGCATGCAAGTTTTTGAGAAGGAAATGCATGCCTGATTGCATTTTTGCCCCATATTTTCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCAAGCAACGTGAGTAAACTTCTGAATGAAGTTCAACCTCACCAAAGGGAGGATGCAGTGAACTCTCTAGCCTATGAAGCTGAGGCACGGATAAAAGATCCAGTTTATGGCTGTGTTGGGGCAATTTCGGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTTGATGCAACAAACGCTGATTTGATTCGTTATACTTGCAATGAAATGCCAACTCAAGATGGTAGAAGAATTGGTGAAGGGGGAGGTTCATCTCTTGGTCAATCTCCTGGTTATTATTACCCTTCTCCTTGGAACAATGATCCACTTGGGGATGGTTATCACAGAGGTGACAATAATATGTGA 489 0.4315 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPTQDGRRIGEGGGSSLGQSPGYYYPSPWNNDPLGDGYHRGDNNM 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03110 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 116 - -
Pste5g03110 162 Coils Coil 89 109 - -
Pste5g03110 162 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Pste5g03110 162 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03110 Pste-Chr5 24182298 24182786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03110 4 113 AS2 family AT3G27650 85.455 1.04e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste5g03110 LOB 8.5e-43 No_clan