Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03109 GTTTTGTCTATGTACCTTGTCCAGTTTCACAATTTCCTCTCATTTTCCTTTCGCAAGCAGCTGCAAGAACTAGAGTAAAAACAGATACTAGTTTGGAACGAAAGAGAAGGAATATTTTCAGTAGATCCAATTCCTTAATTACTTTTTCTTTGTCCAACTAATTCAAATGTCAAATTCGAACATCACAAGTTGTGATAGTTGGAACTTCTCTACAGAGAATACTGGACAAGATGCAGCTGCTGTTAAACAACAGCAATTAGAGATGCTTGGCCAGCTCCATAGTCCAAGTTCAAACACTTCAACTACAACAAATAACAGTAATGGGTCTAACACAATTTCACAGCCACCTGTTAAGAAGAAAAGAAACCTACCAGGAAATCCAGACCCAAGTGCTGAAGTAATAGCATTATCTCCAAACACCCTGGTGGCCACAAACCGGTTCATATGTGAAATATGTAACAAAGGTTTTCAAAGGGACCAAAATCTTCAATTGCACCGTAGGGGCCATAACCTTCCGTGGAAGCTGAAACTGAGAACCACCACTGAAGTTCGAAAACGCGTGTATGTCTGTCCAGAACCCTCTTGTGTGCACCACAACCCAGCTCGTGCACTGGGCGATCTTACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATATGCTGTTCAGTCTGATTGGAAGGCACATTCCAAAATATGTGGAACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGACAGTTTCATCACCCACAGAGCTTTCTGTGATGCACTGAGCGAGGAGAACAACAAATTCAACGAAGGACAGTTGCCAAAGATGCATGGTCCAAACTTGCAACCACCAATAATCCCAAACCGAGTTGCATCACTACCAATCAACAACAATAATCACAAGCACCCATTATCATCACTCCCTCACGATCTCATCACAACAATGCCTGCAAAACCCTTTAACAACAATATGGATGCACTCACGAGAAGCCTTTCGTCCACCTCTTCTCCCTCTCAACTAAACTCAAACTCACCAAACATTATGTTCGAGGAAAATGGTCTCCATTCATCACCTCACATGTCCGCCACAGCATTGCTCCAAAAAGCTGCACAAATGGGCGCAACAGTTAATAGTAACAACAATATGATGAGTGTCGTCGAAAGCATGGCACCACCATCATATGGGATCATGAACCACAACATGTCTCCCTATAATTTCAATGCAAACGGGATGGATGGTGGTGGCAATGACATTGGAATTGGAATGAGTGGTTTGGATATGTTTAATGTTATACTGGATCAAAGTAAGGCCTTGTCGAAGATCATAGAGCAGAACAATAGAAGCAGTTATAATGGTGTTTTGCATGCGATGAATGGTAGGTCATCAAGTGGTTCCATTGATGTTAGTGGAACAAAAGGGAGTGAGGATGTGACGACTTTGGACTTGTTGGGGCTAGGAGGAGGAGGTGGTGAAGGTAACTTCTATGGTTGTGATCAGCAGTCAAAAATGGCCGCTAGAGAGATGGAATATGGAGAAATTGGAAAAATAAGAATGCAGGGCTTCAAGCATTTTCAGCAACAAACAGCAGCATATGAAAATTAATTAAGACTGCCCTTATTGCTGGGGCGGGAAGAATAATTTGCAAGCATCTCTCTTCTATTTTGGAAATTAAAGATGGAATTTTCAGCTAGAACATAATTCCTTTTCGACCATATATATGTACTGGTACACTGCAGAAATCGTGTAGACATTAACACTGATCGGTTTTCCTATGACAAATCAGTGAGTGGACTCTTTTGCACCCTTAAATATATAGTGTTCAGTATCTTTAATCGTCCATATATATAGTTGGTTCATTTACAATATGTAAACGGCCTCTTCACAGCATTTCAATTTCAATCATTCTCGTTTTAGATATATATCTTTTCAATAAGAAAGGAAATGCTGAAAACTGTTGGAACATTAATTTGTGTTTTAAGTTGGTCATTTATTCGTGT 2037 0.403 MSNSNITSCDSWNFSTENTGQDAAAVKQQQLEMLGQLHSPSSNTSTTTNNSNGSNTISQPPVKKKRNLPGNPDPSAEVIALSPNTLVATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALSEENNKFNEGQLPKMHGPNLQPPIIPNRVASLPINNNNHKHPLSSLPHDLITTMPAKPFNNNMDALTRSLSSTSSPSQLNSNSPNIMFEENGLHSSPHMSATALLQKAAQMGATVNSNNNMMSVVESMAPPSYGIMNHNMSPYNFNANGMDGGGNDIGIGMSGLDMFNVILDQSKALSKIIEQNNRSSYNGVLHAMNGRSSSGSIDVSGTKGSEDVTTLDLLGLGGGGGEGNFYGCDQQSKMAAREMEYGEIGKIRMQGFKHFQQQTAAYEN 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03109 491 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Pste5g03109 491 FunFam protein indeterminate-domain 12-like 71 139 - -
Pste5g03109 491 MobiDBLite consensus disorder prediction 37 62 - -
Pste5g03109 491 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Pste5g03109 491 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Pste5g03109 491 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 459 IPR031140 -
Pste5g03109 491 SMART c2h2final6 168 188 IPR013087 -
Pste5g03109 491 SMART c2h2final6 133 163 IPR013087 -
Pste5g03109 491 SMART c2h2final6 92 114 IPR013087 -
Pste5g03109 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Pste5g03109 491 Gene3D Classic Zinc Finger 147 225 - -
Pste5g03109 491 MobiDBLite consensus disorder prediction 37 75 - -
Pste5g03109 491 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03109 Pste-Chr5 24155899 24160918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03109 41 357 IDZ Gene Family AT3G50700 51.676 1.69e-113 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste5g03109 zf-C2H2_jaz 7.1e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03109 5 24155899 24160918 Pste4g01140 4 8545576 8549296 ECH
Pste5g03109 5 24155899 24160918 Pste5g03109 5 24155899 24160918 ECH
Pste5g03109 5 24155899 24160918 Pste4g01140 4 8545576 8549296 PCT