LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g03086	CGCTCTACTCTCTCTCTCTCTAAAACCAGATCCCGCTCCACTCTCTCTCTCTCTAAACGCAGATCCGAGTCTCAAACTCGAACCAATCCATGGCTGAGTCCGAACTCGAACCGAACCTCGATCTCGAAGAGAAATCGTGGCACCTCCTCGCGCTCCTCCTCCGAAACGGCCACGCTATTTATCCGCATCGACTCGCCGCGCAGTGTCGTTTATTCGCCGCGTCGCCGGAATTCATCTGCCACGTCAGCACGCTTCCCGGTTCACCGCTCTCGCTCACCGATAACGGACTCGTCACGCCCTCCGTCTCCGCCGTCTTCGCCCTCGGAAGCTTCTTCTCGCTACGCTTCTCGCCGGAGCCGCAAACGCACCGTTTCAGGAAACGCAAGTTGCTTTTCAATTCCGAAGAAGATGGAAGAGAACACAAGAAGTTAGCGATTCGTAATGCAGTTCCAGAAATTTCATTCCAGGCCTTGCGATTTTTCTTTGGCGTGCAGAGTTTTGCAGATGCTGCAGATGCTCTGATGAGAAGAAATTTCCCTGCAATAAAATTTGAATCACAGAATATTGGTAGCGGGAATTTCATATTCCCCCTGCGTGTTGATAAAAACGATGGCTGTTCAGGTTGTCCAGTGCCAAGTTTTGAACATAGGGAAGCCAATAATGATGCCAGCATAAGTATGTCTAAAGGAGAGGTTTCTGAATCTATTATCAGAGCAAATTACTTAAACTGTCCAAAGTCACTGGATATAAAGAAGAGGTTTAAAAATTTGTTCATGGATTTTAATTTCTTTGTTGACTGTGCTCCCTCTGGTCCCTCATTATGCAAAGATGGTATTGTTAATAATAGCCTTGGGTTAAGGAAGAAAATGGATTATTTTGACACATTTACGCATGACTATACTGAACAAAATAGTATGCTTCATGTGGATGATGTTATTAGTGAAAGTAACACTTGCAAAGATCAATCAAGAGAACCTAATGAAGATAACGAGGTGGAAAGAAGTTCGAAGAAATGGCTGATTGATTGTGGCGTAAATAGAGACGAGGAAGATTTTGCTCAGATGGTCAATGCTGCACTATGTGGAGAAGAATTGACTAACGGTTTTGAACAAAAGAACCCTGTCCATGCAATAAATTTGGAAAAAAAGGAGAGTGAGAGAAACACAGTGATTAGTACTACTGATAAAATAGCTAATTCCTGTTCAAATCCTAATGAAGATAACCAGGTGGAAAGAAGTTCGAAGAAATGGCTGATTGATTGTGGCGTAAATAGAGACGAGGAAGATTTTGCTCAGATGGTCAATGCTGCACTATTTGGAGAAAAATTGACTAACGGTTTTGAACAAAAGAACCCTGTCCACGCAGTAGATTTGGAAAAAAAGGAGAGTGAGAGAAACACAGTGATTAGTCCTACTGATAAAATAGCTAATTCCTGTTCAAATGCAAAACGGCTTTTGAAAGTTTCTAGCATATTAAAGGGTGGACAGAAGAATGATCTACACCCTAAGTCACAAATTCGTAAACAGTCACTAGCCAGCAAAAGAATTGGCAGTGTTCCAAAAGATGTTGAACAGTGTAAAAATGATCAGAAACTTACGATGAGGAAGCAAAATCCTAAAGAGAGCATGACAGGAAATATTGCCACGATTTCGAATGTGGAGAAAAAAGCATATCCATCATTTGAAGCTTTTACCGTAGAGGAAGAAGAAGGTTCAGGTGGTTATGGCATCGTTTACCGTGCTCAAAGAACCACTGATGGAAAACGCGTTGCAATAAAATGTCCTCGTAGTAATGCTCATAAAAACCATGTAAATAATGAACAGAATATGCTCGAGCGTTTCGGTGGTAAAAACTTCATAATAAGGTATGAAGGTTCTTTCAAAAATGGCGACAGCGAGTGTTTTGTTTTAGAACATGTCGATCATGATAGGCCCGAGGTTTTGAAAAAAGAAATTGATATAGTTCAGCTTCAGTGGTATGGGTATTGCTTGTTCAGGGCCCTTTATTGTTTGCACAAAGAGGGAGTTGTTCATAGAGACGTTAAACCTGGAAACTTCCTTTTCTCTCGAAAGCTAAGAAAAGGCTACCTTATTGATTTCAACCTTGCCATGGATTTAAAGCAGAAGCACAACGTTGGAAGTAAATCAAAACCAAGTTCTGATGCATCATCCAATAGCGTTTCTCTCTTTTCTGGTTCTGCTCCTTTGGCCCGAGACAAGAATCTTGGAGGCAGCAAGTCTATAACATCCAATAAAAGGGCTCTAGCAGATTATCAGAATTTTTCTGAACTTAATAGGTTTGTAAAGCAAAAGGCTTATACCGGTCCTCTGAAAAATTGTCCTGATAAGGCTGGTCGGAGTTTCCTTAGAGCACAAGGAACAGATGGCTCTGGTATAACTTCTGCTAAAGATGTTAGCACTAGGACTGCTTCTGCAGAGAAACTCAGGGAACCTTTGCCTTCCCATGGAAGAAAGGAGCTTATCAGCTTTGTGAATACTATGAAATATGCAAACAACAGTTCAACAATAGGTCCTTCTTCTCAAAGGAAAAGGGTTACTGCTCCCTCAGGCAGGGTAGATGGCAAGGTTTTTTATATTTCTCCGATGCCTCTGCATTCATCTACTGTTGGTGGGGCATTATTGAAAACAAAGGAGTTGGAAAACAGAAAAAAGATGGTTCATGTGTTGGAACCAAAGGGTTCCGTGCTCCAGAGCATTTTAAGTTGTTACCTAGAGATGCTATCTCACTGTCCTATAATTGATGTATTGTTAAAGTCTCTGCATCAGGGACATAAGATTGATATTTGGTCAGCTGGAGTCACTCTACTCTACATGGTTATCGGGAAGAGTCCTTTCACTGGCGACCCAGAGCAGAATATAAAAGAAATTGTTAAATTGCGGGGCAGTGAAGAGTTTTGGGAAGTGGCCAAGCTACATGACCGTGAATTATCTTTTCCTCCTGAGTTACTTGATGATCAATACTTACAGCCATGTGACTTGGAAAGCTGGTGCAAGGTTCACACAAAGAGGCCAGAGTTACTTGATCAGATCCCAAAGTCGTTATTTGATTTGATAGACAAATGTCTTGCAGTTAACCCAAGAAATAGACTTAGTGCAGAAGATGTTTTAAGACATGAATTCTTTGACTCAGTTAACGAGACCATGAAGAAGCAAAGGACAATTCATCGAGCTCACAGGTCAGATGCCGCAGCTTCCAGAGCAACCTGA	3227	0.4174	MAESELEPNLDLEEKSWHLLALLLRNGHAIYPHRLAAQCRLFAASPEFICHVSTLPGSPLSLTDNGLVTPSVSAVFALGSFFSLRFSPEPQTHRFRKRKLLFNSEEDGREHKKLAIRNAVPEISFQALRFFFGVQSFADAADALMRRNFPAIKFESQNIGSGNFIFPLRVDKNDGCSGCPVPSFEHREANNDASISMSKGEVSESIIRANYLNCPKSLDIKKRFKNLFMDFNFFVDCAPSGPSLCKDGIVNNSLGLRKKMDYFDTFTHDYTEQNSMLHVDDVISESNTCKDQSREPNEDNEVERSSKKWLIDCGVNRDEEDFAQMVNAALCGEELTNGFEQKNPVHAINLEKKESERNTVISTTDKIANSCSNPNEDNQVERSSKKWLIDCGVNRDEEDFAQMVNAALFGEKLTNGFEQKNPVHAVDLEKKESERNTVISPTDKIANSCSNAKRLLKVSSILKGGQKNDLHPKSQIRKQSLASKRIGSVPKDVEQCKNDQKLTMRKQNPKESMTGNIATISNVEKKAYPSFEAFTVEEEEGSGGYGIVYRAQRTTDGKRVAIKCPRSNAHKNHVNNEQNMLERFGGKNFIIRYEGSFKNGDSECFVLEHVDHDRPEVLKKEIDIVQLQWYGYCLFRALYCLHKEGVVHRDVKPGNFLFSRKLRKGYLIDFNLAMDLKQKHNVGSKSKPSSDASSNSVSLFSGSAPLARDKNLGGSKSITSNKRALADYQNFSELNRFVKQKAYTGPLKNCPDKAGRSFLRAQGTDGSGITSAKDVSTRTASAEKLREPLPSHGRKELISFVNTMKYANNSSTIGPSSQRKRVTAPSGRVDGKVFYISPMPLHSSTVGGALLKTKELENRKKMVHVLEPKGSVLQSILSCYLEMLSHCPIIDVLLKSLHQGHKIDIWSAGVTLLYMVIGKSPFTGDPEQNIKEIVKLRGSEEFWEVAKLHDRELSFPPELLDDQYLQPCDLESWCKVHTKRPELLDQIPKSLFDLIDKCLAVNPRNRLSAEDVLRHEFFDSVNETMKKQRTIHRAHRSDAAASRAT	1045

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g03086	1045	Pfam	Protein kinase domain	535	681	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g03086	1045	Pfam	Protein kinase domain	894	1018	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g03086	1045	FunFam	Probable serine/threonine-protein kinase DDB_G0291918	526	695	-	-
	Pste5g03086	1045	Gene3D	Transferase(Phosphotransferase) domain 1	881	1044	-	-
	Pste5g03086	1045	MobiDBLite	consensus disorder prediction	763	778	-	-
	Pste5g03086	1045	PANTHER	OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED	498	1027	-	-
	Pste5g03086	1045	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	646	658	IPR008271	GO:0004672\|GO:0006468
	Pste5g03086	1045	MobiDBLite	consensus disorder prediction	761	784	-	-
	Pste5g03086	1045	Gene3D	Transferase(Phosphotransferase) domain 1	496	689	-	-
	Pste5g03086	1045	SUPERFAMILY	Protein kinase-like (PK-like)	518	1030	IPR011009	-
	Pste5g03086	1045	SMART	serkin_6	534	1018	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g03086	1045	ProSiteProfiles	Protein kinase domain profile.	534	1018	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g03086	Pste-Chr5	23926888	23933207	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g03086	521	673	Core Cell Cycle Gene Families	AT1G20930	30.357	7.78e-10	59.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-2	Pste5g03086		Pkinase	2.7e-23	CL0016