LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g03054	TTCTCTCTATAATGGATAAAAAACAGTGTAACACGTCTCAAGATCCTGAAGTGAGAAAAGGGCCATGGACAATGGAAGAAGATTTGATCTTGATCAACTATATTGCAAATCATGGAGAAGGTGTTTGGAACTCTTTGGCCAAAGCTGCTGGTCTTAAAAGAACTGGAAAAAGTTGTCGTTTAAGGTGGCTAAACTACCTTCGACCTGATGTTAGAAGAGGGAATATTACACCCGAGGAACAACTTTTGATCATGGAGCTTCATGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCAAAGCATCTACCAGGAAGAACTGATAATGAGATCAAGAACTATTGGAGGACAAGGATTCAGAAACACATCAAACAAGCTGAGAACTTTCAACAACAAAGTAATTCTGAGATTAATGATCACCAAGCTAGCACTAGCCAAGTTTCCACCATGGCTGAGCCAATGGAGACTTACTCTTCACCATGTTATCAAGGAATGATGTTAGAGCCATTTTCAACTCAGTTCCCCACAAATAATCCTGAACAATATTCCAGTTGTTGCACTAATGACAACAACAACTATTGGAGCATGGAGGATATCTGGTCAATGCAATTATTGAATGGAGATTAAATGCATAATTTTATATTATAAACATAAACCTAAGTTCTTAAGTTTCATAAAGCTGGAATGTCTGTGGACCCTGGCTTAAAACCTTTTATTAGGTTTATTTATATAAGTAGTTGGATGTTTGGTTTTGCGTACCATTATATTTCAGAATTAAATTAGCTATGTGCTGTAATATATACGATATCACTCTTATATTAAACTGTATCTGCTGCATGCTTTATATCCAATGAGATGCTATGTGCATTGTAAAAGATATGGTTATTGAGAACCACAAAAGTTTCAACACTCTTAATATATTCCAGTGACAGGCTTTTCTTA	938	0.3625	MDKKQCNTSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENFQQQSNSEINDHQASTSQVSTMAEPMETYSSPCYQGMMLEPFSTQFPTNNPEQYSSCCTNDNNNYWSMEDIWSMQLLNGD	203

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g03054	203	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	64	118	IPR017930	-
	Pste5g03054	203	ProSiteProfiles	Myb-like domain profile.	11	63	IPR001005	-
	Pste5g03054	203	SUPERFAMILY	Homeodomain-like	13	110	IPR009057	-
	Pste5g03054	203	Gene3D	-	73	144	-	-
	Pste5g03054	203	CDD	SANT	73	112	IPR001005	-
	Pste5g03054	203	SMART	sant	68	116	IPR001005	-
	Pste5g03054	203	SMART	sant	15	65	IPR001005	-
	Pste5g03054	203	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	11	63	IPR017930	-
	Pste5g03054	203	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	11	147	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g03054	203	Gene3D	-	16	68	-	-
	Pste5g03054	203	CDD	SANT	18	63	IPR001005	-
	Pste5g03054	203	FunFam	Myb-related protein 305	73	142	-	-
	Pste5g03054	203	Pfam	Myb-like DNA-binding domain	69	112	IPR001005	-
	Pste5g03054	203	Pfam	Myb-like DNA-binding domain	16	63	IPR001005	-
	Pste5g03054	203	Coils	Coil	202	203	-	-
	Pste5g03054	203	ProSiteProfiles	Myb-like domain profile.	64	114	IPR001005	-
	Pste5g03054	203	FunFam	Myb transcription factor	16	68	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g03054	Pste-Chr5	23645442	23648988	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g03054	4	203	MYB Transcription Factor Family	AT3G01530	61.165	2.41e-77	229

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Pste5g03054		Myb_DNA-binding	6.7e-15	CL0123