Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03052 ATTCTCTCTATGCAAAATAATGGAAAAGAAACTATGTAAGGCGTCTCATGATCCTGAAGTGAGAAAGGGGCCATGGACAATGGAAGAAGACTTAATCTTGATCAACTATATTGCAAATCATGGAGAAGGTGTTTGGAACTCTTTGGCCAAAGCTGCTGGTCTTAAACGTACCGGAAAAAGTTGCCGGCTCCGGTGGCTAAACTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACATCTGAGGAACAGCTTTTGATAATGGAACTTCATGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCAAAGCATCTACCAGGAAGAACTGATAATGAGATCAAGAACTATTGGAGAACAAGGATTCAGAAGCACATCAAGCAAGCTGAGAACTTTCAACAACAAAGTAATTCTAAGATTAATGATCACCAAGCTAGCACTAGCCAAGTTTCCACCACGGCTGAGCCAATTGAGACATATTCTTTACCATGTTATCATCAAGAGATGATGTTTGAACCATTTTCAGCTCAGTTCCCCACAAACAATCCTGAACATTCCAGTTGTAGTACCAATGACAACAACAACTATTGGACCATGGAGGATATCTGGTCAATGCAATTTAGCCAATTACTAAATTAAACCTATAAACACATTATGTGTATAAACCTGATAAGTGTCTAAGTTCTATATATAAAGCTAGAATCTCTCGCTTAAAACATCTATATTAGGTTTGTTTATATAAGTAGTTGGATGTTTGGACTTCGGTGTTTTGAGTACCATCAAATATTTAAGATCTAATAAAT 798 0.3772 MEKKLCKASHDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITSEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENFQQQSNSKINDHQASTSQVSTTAEPIETYSLPCYHQEMMFEPFSAQFPTNNPEHSSCSTNDNNNYWTMEDIWSMQFSQLLN 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03052 204 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pste5g03052 204 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pste5g03052 204 SMART sant 68 116 IPR001005 -
Pste5g03052 204 SMART sant 15 65 IPR001005 -
Pste5g03052 204 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Pste5g03052 204 CDD SANT 73 112 IPR001005 -
Pste5g03052 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pste5g03052 204 FunFam Myb-related protein 305 73 142 - -
Pste5g03052 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pste5g03052 204 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 171 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pste5g03052 204 CDD SANT 18 63 IPR001005 -
Pste5g03052 204 Gene3D - 16 68 - -
Pste5g03052 204 Gene3D - 70 144 - -
Pste5g03052 204 FunFam Myb transcription factor 16 68 - -
Pste5g03052 204 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Pste5g03052 204 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03052 Pste-Chr5 23607610 23614950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03052 14 199 MYB Transcription Factor Family AT3G01530 57.979 3.59e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste5g03052 Myb_DNA-binding 6.7e-15 CL0123