Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03043 ATGCCTATGTCAGCAAATAATATCACCTTTTGCATGTACCAAAACAATTTCAGCAATCTTCAGCAGCATCTCCTCAATGAGCCAAACCATGAGAATCACCCTGCTGCAAACTTTTTCACTGAGGGTTCTTCCTCTTTCATCACTCCATTGTTTACTTTGTCCTCATCATCACCTCCTATTTCTGGTAATTCAACACCATCCAACAAATCCTCTTACTCCAATGACCAGTCCTTTAAAGAAGCCTTTGTCAACCCTTACTTTCACCCTGTGCCTTATGCTCCAGACAGCAACCAAGTTGATCCCATGCATGGCCATTCCAACACCAGCAACAAGGCCATTTGGGATTTTTCCCAGAGTACAAGGGCAACTTCACACCTTCAGAAACAGGTGCAGCAGAGGAGGAGTAGTGGCAGAAGCCACCACAAAATGATGACTAACATAATCAAAGGCCAGTGGAGTGCTGAAGAAGACAGGGTCCTGGTTCAATTGGTGAAACGTTTTGGGGTCAAAAAATGGTCTCACATTGCTAAGTTGCTGAATGGAAGGGTTGGCAAACAATGCCGGGAGAGATGGCACAACCATCTCAGGCCAAATATTAGGAAAGAGTCCTGGAGTGAAGCTGAGGACAAGATCCTGATTCAAGCTCATAGGGAGCTCGGCAACAAGTGGGCAGAGATAGCAAGGAGAATTCCTGGGAGGACAGAAAACACTATTAAAAACCATTGGAACGCGACCAAGCGTCGCCAGAATGCAAAAAAGATGAGAAACAAGCGCAGAGGAATGAAGAAGGGAGTCACTATGCTGGAGAATTACATAAGGCAAGTCTCTGAGGTGGAAAATGCTGAGAAGGATTTGAAGAACTCCATGATCCAGATGAACCTCAAGGGTGAAAAGGCCATAATTTATGGTTTCTGTCAGGTTCGGTACGAAACCTCAGAGGGTGACTTCAGCGAGGATGAAGCTGGGTGGAACCTGCCATATGGCGGCGGCGGCTATGTGCCTGTGATGGTAAACGCTGTGGAAAACAACACAATGGATTATGAGCTTGCAATGGAGATGGGGCCAGATATGAACAAGGAAATGGATCTCATGGACATGATCTATAGGAAAGCTTAA 1116 0.457 MPMSANNITFCMYQNNFSNLQQHLLNEPNHENHPAANFFTEGSSSFITPLFTLSSSSPPISGNSTPSNKSSYSNDQSFKEAFVNPYFHPVPYAPDSNQVDPMHGHSNTSNKAIWDFSQSTRATSHLQKQVQQRRSSGRSHHKMMTNIIKGQWSAEEDRVLVQLVKRFGVKKWSHIAKLLNGRVGKQCRERWHNHLRPNIRKESWSEAEDKILIQAHRELGNKWAEIARRIPGRTENTIKNHWNATKRRQNAKKMRNKRRGMKKGVTMLENYIRQVSEVENAEKDLKNSMIQMNLKGEKAIIYGFCQVRYETSEGDFSEDEAGWNLPYGGGGYVPVMVNAVENNTMDYELAMEMGPDMNKEMDLMDMIYRKA 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03043 371 MobiDBLite consensus disorder prediction 122 141 - -
Pste5g03043 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 199 IPR017930 -
Pste5g03043 371 ProSiteProfiles Myb-like domain profile. 196 246 IPR001005 -
Pste5g03043 371 CDD SANT 203 246 IPR001005 -
Pste5g03043 371 SMART sant 200 248 IPR001005 -
Pste5g03043 371 SMART sant 148 197 IPR001005 -
Pste5g03043 371 PANTHER MYB PROTEIN-RELATED 120 257 - -
Pste5g03043 371 Gene3D - 148 200 - -
Pste5g03043 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 250 IPR017930 -
Pste5g03043 371 Pfam Myb-like DNA-binding domain 152 210 - -
Pste5g03043 371 Coils Coil 268 288 - -
Pste5g03043 371 SUPERFAMILY Homeodomain-like 146 242 IPR009057 -
Pste5g03043 371 ProSiteProfiles Myb-like domain profile. 144 195 IPR001005 -
Pste5g03043 371 FunFam Transcriptional activator Myb isoform A 148 201 - -
Pste5g03043 371 CDD SANT 152 195 IPR001005 -
Pste5g03043 371 Gene3D - 202 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03043 Pste-Chr5 23515775 23520701 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03043 145 275 MYB Transcription Factor Family AT4G18770 63.359 1.30e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste5g03043 Myb_DNA-bind_6 2.5e-18 CL0123