Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03039 GCCTTTGTCAACTACTGCTGCCACCCTATGGCTTATGCTCCAAACAGAAAACAAGTTGATACCAAGCATAGCAACCACAACACCACAAAGGCCATCTTGGATTTTTTTCAGAAAACTCGATTCAATACAGGTGCTATGGCACCCTTCAGTCATAAACAGAGAACTGACAATAGCAGCAACCACCAGAAGAAGATGGCTAACATAACCAAAGGCCAGTGGAGTGCTAAAGAAGACAAGGCCTTGTTTCAATTGGTGAAATGTTTTGGGAAGCAAACATGGTCTCTCATTACTATGGTGCTGAATGAAAGGATTAGTAAACACTGCAGGGATCGATGGCACTACCATATCAAACCAAAATTATGTGTTGGATCGTACCTGCAGGGTATGCGTCAGTTTAGGAATGGGAACGTGCCATATGGCGGAGGCTATGTGCCTGTGATGGTGAACGTTGTGGAAAACAACCCAATGGATAATGGGCTTGCAATGGAGATGGAACTAGACCTAAACAAGGAAATAGATGTCATGGAACTTGGTCAATAG 540 0.437 AFVNYCCHPMAYAPNRKQVDTKHSNHNTTKAILDFFQKTRFNTGAMAPFSHKQRTDNSSNHQKKMANITKGQWSAKEDKALFQLVKCFGKQTWSLITMVLNERISKHCRDRWHYHIKPKLCVGSYLQGMRQFRNGNVPYGGGYVPVMVNVVENNPMDNGLAMEMELDLNKEIDVMELGQ 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03039 179 CDD SANT 73 116 IPR001005 -
Pste5g03039 179 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 120 IPR017930 -
Pste5g03039 179 SMART sant 69 118 IPR001005 -
Pste5g03039 179 Pfam Myb-like DNA-binding domain 73 120 - -
Pste5g03039 179 Gene3D - 69 121 - -
Pste5g03039 179 SUPERFAMILY Homeodomain-like 67 119 IPR009057 -
Pste5g03039 179 FunFam Transcriptional activator Myb isoform A 69 121 - -
Pste5g03039 179 ProSiteProfiles Myb-like domain profile. 65 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03039 Pste-Chr5 23441281 23444323 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03039 62 120 MYB Transcription Factor Family AT4G18770 47.458 7.32e-15 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pste5g03039 Myb_DNA-bind_6 4.4e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03039 5 23441281 23444323 Pste5g03039 5 23441281 23444323 ECH