Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03027 AGAATGAATTTGGTAATGATGGATCCTTGTGATTGCGAGAACAAGAAATGTTGCGCTGATTGCAAAACAACAAAGACCCCACTGTGGAGAGGAGGACCAGCTGGACCCAAGGCCCAACAACACCCATTTCTATTTCCTTTCATCATTTCCCATCTACGGCCTCAATTATTTATTTTTAGTTTTACGCTATGCAACGCTTGTGGAATTAGGTATAGGAAGAAAAAAGGTTGTTCGAGGAAGCGAGAGGAGGTTGTGTTGTTGGAGCGGACATCCTCTGTGGTTGTGAAGAAACAGAGGTGGGGCGAAGAGGAACAAGCCGCTTTGTGTTTGATGGCCTTGTCCTGTGGTTTTCTTTTTGCACATTCCAGGACGCTTCCTGTGCCTCTCATTATAACTACCTATTTTCTCCAAATGTTTTTCTTCTTCACTGCCAATAACACCTTCTTTCAGACAAGCTCCATGATTTTTTCATTATTGCATGTACCTAGATGTAGAATACAAAGCTTAGCTAATTACTGTGGGGAAACCTTTCACAGTTTCAGTACAACTTGTGGAAACAATTCTGGCATCAGGCTGCTTAGTTCTAGAATTTATGGTCTTCAGGGAGGACAGAGAAAGAAATGGACAAGACCTATAAGTACAAATACAGGCAAAGGGAGCACCAAATCAAAAAGTATCAAGCATGGTATTTTGAGTGAAACCATTTTAACTAGTACTACTGCAAGTGTAAATAAAACACAGCTAGATCAATTCCAGGAAGTTCAGTACTATGACATACGACAAGAGATTGCTCAGAATAAAGACTTGTCTAGCTTAGTTACCATTATTGTTTTTGATATTGAGACCACAGGGTTTAGCAGAGAGAATGAAAGGATCATTGAAATTGCACTTCGAGATCTTCAGGGTGGCGAGAACAGCACTTTTCAGACTCTAGTAAACCCTCAATGCAAAGTTCCTAATTCACATATTCATGGCATTACTACTCAGATGGTCAACAAACCTGATGTACCAAGGATGGAGGACCTAATTCCCATCTTATTGCAATACATTAGAAGTCGTGAGAAGCCTAGAGGACATGTTTTATTGGTAGCTCATAATGCTCGCTGTTTTGATGTACCATTCATCATTAACGAGTTACGACGTTATTCTATGGAGATTCCTCCTAATTGGTATTTTTTGGACACTCTTCCTTTAGCGCGTGAGCTGCGTGAACTAATGAAGTCTGAAGGAAAAGAACTTTCTTCAACTTCTCTCACTGCCCTTCGTGACCTCTATGGAATTAAAGTGGATGGATCAGCTCATAGGGCCATGGTGGATGTGAACACATTGTCCTTGATTCTTCCCAAGTTGACCTTTGATCTCAAATTGACTTTGTCTAGCCTTGTCAAAAAATCATTCACAGAATCAGATATGATCAACTCTAAGAAGAAGAAGAATTTTAGACTAATTTTCTGACAAAAGAATTATTTGTATTTGATTTGTAACAAAAATTAGACTGTTCCAAAGAGAAAATAAATGTTGATTGTAATTGCTCACTTGTTATCGATAAAATATCGTTATTATGTACTAAA 1571 0.3883 RMNLVMMDPCDCENKKCCADCKTTKTPLWRGGPAGPKAQQHPFLFPFIISHLRPQLFIFSFTLCNACGIRYRKKKGCSRKREEVVLLERTSSVVVKKQRWGEEEQAALCLMALSCGFLFAHSRTLPVPLIITTYFLQMFFFFTANNTFFQTSSMIFSLLHVPRCRIQSLANYCGETFHSFSTTCGNNSGIRLLSSRIYGLQGGQRKKWTRPISTNTGKGSTKSKSIKHGILSETILTSTTASVNKTQLDQFQEVQYYDIRQEIAQNKDLSSLVTIIVFDIETTGFSRENERIIEIALRDLQGGENSTFQTLVNPQCKVPNSHIHGITTQMVNKPDVPRMEDLIPILLQYIRSREKPRGHVLLVAHNARCFDVPFIINELRRYSMEIPPNWYFLDTLPLARELRELMKSEGKELSSTSLTALRDLYGIKVDGSAHRAMVDVNTLSLILPKLTFDLKLTLSSLVKKSFTESDMINSKKKKNFRLIF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03027 484 PANTHER THREE PRIME REPAIR EXONUCLEASE 1, 2 212 478 IPR040393 GO:0008408
Pste5g03027 484 CDD DEDDh 276 447 - -
Pste5g03027 484 Gene3D - 273 464 IPR036397 GO:0003676
Pste5g03027 484 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 13 75 - -
Pste5g03027 484 SMART exoiiiendus 274 456 IPR013520 -
Pste5g03027 484 Pfam Exonuclease 276 443 IPR013520 -
Pste5g03027 484 SUPERFAMILY Ribonuclease H-like 272 453 IPR012337 -
Pste5g03027 484 ProSiteProfiles GATA-type zinc finger domain profile. 18 54 IPR000679 GO:0006355|GO:0043565
Pste5g03027 484 Gene3D - 13 103 IPR013088 GO:0006355|GO:0008270
Pste5g03027 484 SMART GATA_3 12 84 IPR000679 GO:0006355|GO:0043565
Pste5g03027 484 CDD ZnF_GATA 18 75 IPR000679 GO:0006355|GO:0043565
Pste5g03027 484 FunFam Exonuclease DPD1 chloroplastic/mitochondrial 273 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03027 Pste-Chr5 23269400 23278856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03027 13 120 C2C2-Gata Transcription Factor Family AT5G49300 38.931 7.06e-19 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pste5g03027 RNase_T 1e-22 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03027 5 23269400 23278856 Pste5g03027 5 23269400 23278856 ECH