Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02998 CTTGACTTTACATTTCAGTGTTACATGTTGATACAAACTCTCACCTTCCTTTCTCTTTCTTTCATTCCACTGTTCACTCTCTTTCTCCCACTTTAATCTGTCCTCTCCTCTTTTGTTCCTTTCCCCAGGTTTTCTTGAAAAAGAGAAGTCTTTGTGCAGTTGAGTGATGGAAACAGTTTACAGGTTGAAACATCTTTTGCCTTGCATAGAGGATGTGGTTAGAGTTGGGGAAGCGAGAGCGTCAGCTGCTACTACTTCAGAAATGCGTCTAGGATCAACAGCTAATTGTCACCTGCAGCTAGAAGCTCCTCAACAGAATGTAAATGAGTCAGATATATCGGATCGGATGATCAAGATCCAGATCGCCAATCACCCTCTTTATCCACATTTACTCTCTGCGTATATTGAATGCCAAAAGGTTGGAGCACCCGTAGAACTCGCATGTATTCTTGAAGAAATAGGCCGAGAAAGCCAGCACATGAATGCTCATGGTGAGATAGGGAATGGCCCTGAACTTGACCACTTCATGGAAACGTACTGCCAAGTTCTGCATAGATACAAGGAAGAATTGTCCAGGTCCTTCAACGAAGCCACTTTGTTTTTGGGTAACATGGAATCACAACTCACTAATCTTTGCACTGGAGCACTAATAAAGTCATCGGATAACAATCGCACCGATGAGGTAGCTAGTGGGGCATCGGAGGAGGAACTAAGTTGTGGGGAGGTGGAAGGTTATGTATCTTCTGTAACTTGTCCAGGGGATCAAAAGATTAAAGAGATGCTCCTTCGCAAATACAGCGGCCATTTTGGCAGTTTGAGAAAGGAATTTTTAAAACGAAGAAAAAAGGGTAAGCTACCAAGGGATGCAAGGATAGCTCTCATGGATTGGTGGAACACCCATCATAGATGGCCTTATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAATTACTGGACTGGATCAAAAGCAGATCAATAATTGGTTCATAAATCAGAGGAAACGGCACTGGAAACCAAGTGAGGATATGCGATTTGCCGTTATGGACGGGTTAAGTGGCGGTGGAGGACCTATGTTGTTTTAGTTCTGGAATTGTTCCTCAATTACAGGAGTAATGTATCCACTGCATTCCCTGTTCAAATTATATATACTAAATTTCGGAGTTGGCAATCTTGTTTGCCAAGTACGTTTTCTAATTAATATACTTGTCAAAAAAGTTGTAGTAGCAGTGGTTGTATAACGAGTCTTTGATTATTTTACAACAATGTGATGCAATTAGGGGTTTGTTTAAAATCAAACAAATCCTATATAAACGATGAGATAGAACAAAAAAATAAAAAAT 1342 0.4083 METVYRLKHLLPCIEDVVRVGEARASAATTSEMRLGSTANCHLQLEAPQQNVNESDISDRMIKIQIANHPLYPHLLSAYIECQKVGAPVELACILEEIGRESQHMNAHGEIGNGPELDHFMETYCQVLHRYKEELSRSFNEATLFLGNMESQLTNLCTGALIKSSDNNRTDEVASGASEEELSCGEVEGYVSSVTCPGDQKIKEMLLRKYSGHFGSLRKEFLKRRKKGKLPRDARIALMDWWNTHHRWPYPTEEEKVKLSEITGLDQKQINNWFINQRKRHWKPSEDMRFAVMDGLSGGGGPMLF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02998 305 Gene3D - 219 292 - -
Pste5g02998 305 Pfam ELK domain 203 222 IPR005539 GO:0003677
Pste5g02998 305 SMART KNOX1_2 60 104 IPR005540 GO:0003677|GO:0005634
Pste5g02998 305 SUPERFAMILY Homeodomain-like 223 296 IPR009057 -
Pste5g02998 305 Pfam KNOX2 domain 111 157 IPR005541 GO:0003677|GO:0005634
Pste5g02998 305 ProSitePatterns 'Homeobox' domain signature. 259 282 IPR017970 GO:0000981|GO:0006355
Pste5g02998 305 Pfam KNOX1 domain 62 103 IPR005540 GO:0003677|GO:0005634
Pste5g02998 305 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 71 291 - -
Pste5g02998 305 ProSiteProfiles 'Homeobox' domain profile. 221 284 IPR001356 GO:0003677
Pste5g02998 305 CDD homeodomain 224 285 IPR001356 GO:0003677
Pste5g02998 305 SMART ELK_2 201 222 IPR005539 GO:0003677
Pste5g02998 305 Pfam Homeobox KN domain 241 280 IPR008422 GO:0003677|GO:0006355
Pste5g02998 305 SMART HOX_1 223 288 IPR001356 GO:0003677
Pste5g02998 305 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677
Pste5g02998 305 SMART KNOX2_2 107 158 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02998 Pste-Chr5 22934410 22940437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02998 20 299 Homeobox Transcription Factor Family AT1G23380 52.069 2.46e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pste5g02998 KNOX2 1.7e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02998 5 22934410 22940437 Pste5g02998 5 22934410 22940437 ECH
Pste5g02998 5 22934410 22940437 Pste4g01272 4 9360979 9365522 PCT