Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02973 AGCGATCAAAGAAAGCACAAAAGTCCGCGCAGCAATACAATGGGAGTCCACGGTCTCTGGGAGCTACTCTCCCCGGTGGGTCGCCGCGTCTCCGTTGAAACCCTCGCCGGAAAAACCCTCGCCGTCGATGCGAGCATATGGATGGTGCAGTTCGTGAAAGCGATGCGCGACGATAAGGGCGAAATGGTTCGAAATGCGCATTTGCTTGGCTTCTTCCGTCGCATTTGCAAGCTTCTGTTCCTCCGCACCAAACCCGTGTTCGTCTTCGACGGCGGCACCCCCGCTCTCAAGCGCCGCACCGTCGTCGCCCGCCGCCGCCAGCGTGAAAACGCCCAGGCCAAAGTCCGCAAAACTGCTGAGAAATTGCTGCTCAATCATTTAAAGGCACTAAGGTTGAAGGAACTGGCTGATGATATTAAGAACCAGAGGATGAAGAAGAATAGTGATACTAAGGATCAGAAAAAATCTCATCAGAAGGGCTTTGTTGGTAGTGACTTAGGAGGAAGTCATGTGAAAGAACCAAATGAGATGTCTGCAGGTAAATATGCAGCTAAGGAGAACAAAAATTCTTCACAGGCAGCAATGATATCAACAAATTATAACCAGGAGGAGCTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAGTGGAATACATGCCAGAAAAGGAAAGGCATCTATTGTAATTAATCCTTCGGAGGAGGAACGTAATGCAGACGAACATATTATACTGCCATCAGTAAATGAAGAAGTTGATTTAGCTGTATTAGCTGCTTTGCCACAATCAATGCAACTTGATATTCTTGCACAGCTTAAAGGAAAGAAAACAGAAGGACCAGTAAAGGAAGTTGACAACCAGGAGCAACACGGTGTCAATTATCAGGGCAAGGGTAAGGGGGTTCTTTTCAGTGAAGCTGACATTGTAGGTGGTTGCTCCAGACATGACAATGTTACATTGAGGAGTGACAATCAAGACTCAATTGATGAAATGTTAGCTGTGTCTATTGCTATGGAGGAAAAGGAAGAGTTAGTAAATAACGCATCAATCTCTGTTGGGGCTTCCGCTATTGTGGAAGATGAAGTTGATTATGATGAAGATGAAGAGATGATACTGCCAGCTATGCATGGTGAAGTTGATCCTTCTGTTCTAGCTTCATTGCCTCCATCAATGCAGCTAGACCTTCTTGTTCAGATGAGAGAGCGTTTGATTGCAGAGAACAGACAAAAGTATCAGAAAGTGAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGGGAGATAGATGGAGTGCAGAAAGCTGCAGCTGGAGGAGTAGGTGGTGTACAGACTTCACGGATTGCATCTGAAGCCAACAGAGAATATATATTCTCATCATCTTTTACTGGTGATAAACAGGAACTTACCTCCTCCAGACTAGAGAAAAATAAAGATACACAACAGAAGGCACAGGGAGAACATCCTTCACAGAATCTTGCAACTAGTATCGTGGCAGGAAATAACTCTGGTACTTCAAGTGGTTTGGTTCACAATGAGCCTAGTGAGCCTGCTGATGAAAGTATTCAGACATATCTTGATGAGAGGGGCCGATTTCGAGTTAGTAGATTGAGAGCTATGGGGATGCGTATGACCCGTGATATACAAAGGAATTTGGATTTGATGAAGGAGATTGAGCAGGAAAGAACACATGTGAACAAGGCTGCAAATATTGGAACAGTGAAAAATGCAGAAAATAATGGTCCATCAGAAAGTTTTGGGATCCAGCTAGTTGGTAAATCACCAGAGGTGAATGTGAACTTAAATGGAGAGAATTTGCAAAATGAGCAAATAATGCTTGACAAGGATGCTTCTATAGAGATATCTTTTGAATATGATTGCAAGAATAAGTTTGCAAATGCTGAAGATGATAATATATTTTCTACTTTAGTAGGAGGAAATCCGGTGGTGATCTTTGGAGCTGATGATACTGCAGCAACTGAGCAACCTTCTCATTCTGATTCAGATTGTGATTGGGAAGAAGGAATTGTCGAAGATAAGAGTACTGCCTTTCCTGAACATGAGAAGGTAGAGTTGAAGTCTTGTGTTGCAAACAAGGATGATAATAATGAAAGTGAAGTAGAGTGGGAGGAAGGAGATTGTGATGGTGCTAACAGCACCTTACCGTCTGGAAAATTAGCATCTCGAGGGTGGTTCGAGGAGGAGTCTGATTTGCAAGAGGAAATAAGGAGAAGTCTTGAAAGTACAGGGAATGAGAAACTTAAATGCATGTCATTGTCATCTGTAGATGAGCATTCAAATACTTATGAGAACAAATTGGGTCGTGGTTTAGAACATGGTAATGATGTGTATTGTCGTGGTCCAGTGGATTTAAACGACAATGCTGGATCCCTGAATAATAAAAATAATATGGAGGGATTCAATATGTGTATTAGGGAAGACAGTACTGAACAAAATGAATTACATGAAATTGAAGACAGAGATGAAAAACATGATTTTATTTCTGGAAATAATGCACAAACTTTCCACTTTCATGGTAGTCAGTCAAAGTCATCTGTGACATTTAATTCCAATAACACTAAGATATTAATCAATACACCTTCCAGACTGGATAGTCCCTCTTGTTCTGAAGATCCAGTATCAGATACAAATTTAATGATGAAGGGCCAGGTACCTATGGTTGCAGAGAAATTATTGGACAAACGTGATGATGCTAAAGTGTCTTCCTATTGTAACGATACACCCAAGGTTGATTCAGTTTGTGCAACTAAAGAGGAGAAAAAGAACTATCTTCATGAATCTGAACCATTGAGTAATTCTACTGACACTACCAAACCTGCTATTCTTGTGGTGGAGTCATCCTTGAAACGATCAACAGAAGACCTTGATATTGAGCCTAAATTGCCTTCAGAGGATGATAATAGAAATTTCTATGAGGAAAGGAATAGTAGCATTGGCAATGATGTGGTTAATACCCAGGGAGATTTTCCTGCTCATGCAGCTGAGGTTAGCTTGGAGGAAGAAATGAAAATTCTTGGTCAAGAATATACCAATCTAGAAAATGAGCAGAGGAGGCTAGAGCGGAATGCGGATTCTGTAAACAGTGAATTATTCACTGAATGTCAGGAACTACTACAAATGTTTGGCTTGCCATATATTATTGCTCCGATGGAAGCAGAAGCACAATGTGCTTATTTGGAACTTGAGAAACTAGTTGATGGTGTTGTGACTGATGACTCTGATGTCCTTCTATTTGGGGCACGAAGTGTTTACAAAAATATATTTGATGATCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGATTGAGCAGAGAAAAATTAATACGCATGGCTCTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATCGAGGTTGTGAATGCCTTCCCTGAGGAAGATGGTCTTGTGAAATTCCGGCAATGGGTTGAGTCACCGGATCCCACCATCCTTGGAAGGTTGGATACAAAAAGTGGATCAAATACCAGAAAGAAAGGGTCAAAAGGTGAAGAAAAGATAAATTCCTCAAATCACAATGTTAAAGAGTCTTTATCAGAGCAGAACATCCCCCATTCTCAGGAGCAAAACAAGTTGCCTGATTACATCCAAGAAATAAAGCAAACTTTCTGCAATAAGCATAGAAATGTTAGCAAGAATTGGCACATTCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTACTATTCTCCACATGTTGATAAATCAACTGAGCCTTTCACATGGGGGAAGCCGGATCATCTTGTTCTTCGAAAATTGTGCTGGGAGAAATTTGGGTGGACTGGCCAGAAAGCAGATGAATTGCTAGTACCCGTGTTAAAGGAGTATAACAAACATGAGACTCAATTGCGTTTGGAAGCATTTTACAGTTTTAATGAAAGATTTGCAAAAATCCGTAGCAAAAGAATTAAGAAAGCAGTAAACGGAATCACTGGTAAACAGCCTTCAGATTTGATAGATGATTCTGCAGAAGAGTTGTCCAAGAGCAGGAAGGCTGGGAGTGAACCTGAGGCTAGTACATTGGAAACTTCAAGGGGAACAAAGGAAAGTATTGAAGGTAGAAGGAAATCAAAAGTAAAACCATCAAGGAAAAGGAAGAATGATACTGTTGCTAAGGAGCCGTCAAAGAAAAAGAAAGTCAATGATAATCCCTCTTCAGCACCTGGTACATCTGAGATGGATAATTTATTGCCAAATATGCAGATAGACGAAGAGAAATGTAATGATAAGGCATTGATTCGCAATAGAAGTGGAAGAGAAAGAGGCAAGGGTATGAGAATAAAAAGTGTAAAAGATAAGGAAAGTTTCAGTTTTCAATCTTGTGAAACTGAAACCTCATCTGGTAGCAGTGACATTGATGATCATGGGCCAAAAGTGGTGGATAAAGTTCCAAAAGATTCAATGCGGTCTCGGAAACCTGTCAACTATTCTTTCAAAGACTCTGAAGATGAAGAAGATGCGGATGATTCGTTTGATCAGAGCAATCAGACTGGTCCAATAGAAGAAAATTTATCCCACACTCATGGTGCATGTGAAGATGCTGCGACGGATTTAAGCATGGGTAAAGAATGTAGTGCAATGAATTTTCCTCTAAAGGGGAACTTGCCTACAAACTCTCTTGAGTCAGAAGATGGGTTTCGCATGGACGCAGATGAAACTAGTCATGCTGGTACTGGCAATCATGACCCTTTTGAAGACTACCTTAAAATGGGAGGTGGCTTCTGTTTAGATGATGATGAGTCAGGTAACAAGCAGGATACAGCTGATGATGTCAATACCACTACTGTGGATAATACTGCTGAATTTCCACTCTCTTCAGATTGTTTGGATAAAACTGACCGTGATAAAAATAGTTCCGATATATTATTTTCTGACACTGAAAAGGCTGAAAATGGGACAGAAGGTGGTGGGGCCTCTGGTAAATTCATAGAACCAAATGACCTTGCAAATGCTAGTAGTAATGATCATTCTGACATAGTGACCTTGAAACCAGAGGATGCTCAAAACAATAGTAGAGCCTCCACCGGAGCTTTTAGTGCTATGCCGTTTTTGAGGAAAAGAAGGAAGAAGTGAAACTTTTCTAACCTTGGATGTCAGGCTTGTGCACATATCTGTGATCTATCAACCCTCCTAATTGTTTATTTCTTTAATTATGTAATTCCTTCTTGCTCCGTTTGATTGTTAGGAGAAGGGGCTCTTAGAAACACTGGCTTGACATTCATGGTATTTAGTATTATTATTACTGAAGAGAATGTAAATGGTCATGTGACTCTATGGCAATCAACTTTTGATTGGTTTACCTAGGGAAAGATGGACTACTCGAGGGTATAAAACATTTGACACCATAAATATCAATGACATTAAGGAAAGGGTGTAAATACTTTCTGTC 5503 0.4065 MGVHGLWELLSPVGRRVSVETLAGKTLAVDASIWMVQFVKAMRDDKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVVARRRQRENAQAKVRKTAEKLLLNHLKALRLKELADDIKNQRMKKNSDTKDQKKSHQKGFVGSDLGGSHVKEPNEMSAGKYAAKENKNSSQAAMISTNYNQEELDEMLAASIAAEESGIHARKGKASIVINPSEEERNADEHIILPSVNEEVDLAVLAALPQSMQLDILAQLKGKKTEGPVKEVDNQEQHGVNYQGKGKGVLFSEADIVGGCSRHDNVTLRSDNQDSIDEMLAVSIAMEEKEELVNNASISVGASAIVEDEVDYDEDEEMILPAMHGEVDPSVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREIDGVQKAAAGGVGGVQTSRIASEANREYIFSSSFTGDKQELTSSRLEKNKDTQQKAQGEHPSQNLATSIVAGNNSGTSSGLVHNEPSEPADESIQTYLDERGRFRVSRLRAMGMRMTRDIQRNLDLMKEIEQERTHVNKAANIGTVKNAENNGPSESFGIQLVGKSPEVNVNLNGENLQNEQIMLDKDASIEISFEYDCKNKFANAEDDNIFSTLVGGNPVVIFGADDTAATEQPSHSDSDCDWEEGIVEDKSTAFPEHEKVELKSCVANKDDNNESEVEWEEGDCDGANSTLPSGKLASRGWFEEESDLQEEIRRSLESTGNEKLKCMSLSSVDEHSNTYENKLGRGLEHGNDVYCRGPVDLNDNAGSLNNKNNMEGFNMCIREDSTEQNELHEIEDRDEKHDFISGNNAQTFHFHGSQSKSSVTFNSNNTKILINTPSRLDSPSCSEDPVSDTNLMMKGQVPMVAEKLLDKRDDAKVSSYCNDTPKVDSVCATKEEKKNYLHESEPLSNSTDTTKPAILVVESSLKRSTEDLDIEPKLPSEDDNRNFYEERNSSIGNDVVNTQGDFPAHAAEVSLEEEMKILGQEYTNLENEQRRLERNADSVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLSREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLVKFRQWVESPDPTILGRLDTKSGSNTRKKGSKGEEKINSSNHNVKESLSEQNIPHSQEQNKLPDYIQEIKQTFCNKHRNVSKNWHIPSSFPSETVISAYYSPHVDKSTEPFTWGKPDHLVLRKLCWEKFGWTGQKADELLVPVLKEYNKHETQLRLEAFYSFNERFAKIRSKRIKKAVNGITGKQPSDLIDDSAEELSKSRKAGSEPEASTLETSRGTKESIEGRRKSKVKPSRKRKNDTVAKEPSKKKKVNDNPSSAPGTSEMDNLLPNMQIDEEKCNDKALIRNRSGRERGKGMRIKSVKDKESFSFQSCETETSSGSSDIDDHGPKVVDKVPKDSMRSRKPVNYSFKDSEDEEDADDSFDQSNQTGPIEENLSHTHGACEDAATDLSMGKECSAMNFPLKGNLPTNSLESEDGFRMDADETSHAGTGNHDPFEDYLKMGGGFCLDDDESGNKQDTADDVNTTTVDNTAEFPLSSDCLDKTDRDKNSSDILFSDTEKAENGTEGGGASGKFIEPNDLANASSNDHSDIVTLKPEDAQNNSRASTGAFSAMPFLRKRRKK 1715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02973 1715 FunFam DNA repair protein UVH3 1113 1170 - -
Pste5g02973 1715 MobiDBLite consensus disorder prediction 467 481 - -
Pste5g02973 1715 Gene3D - 1113 1167 - -
Pste5g02973 1715 MobiDBLite consensus disorder prediction 1336 1535 - -
Pste5g02973 1715 MobiDBLite consensus disorder prediction 1343 1357 - -
Pste5g02973 1715 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Pste5g02973 1715 CDD H3TH_XPG 1116 1260 - -
Pste5g02973 1715 Pfam Ubiquitin binding region 366 391 IPR025527 -
Pste5g02973 1715 Pfam Ubiquitin binding region 236 259 IPR025527 -
Pste5g02973 1715 MobiDBLite consensus disorder prediction 1473 1505 - -
Pste5g02973 1715 Gene3D - 991 1112 - -
Pste5g02973 1715 SMART xpgineu 1044 1113 IPR006086 GO:0004518
Pste5g02973 1715 ProSitePatterns XPG protein signature 2. 1047 1061 IPR019974 GO:0016788
Pste5g02973 1715 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Pste5g02973 1715 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Pste5g02973 1715 Pfam XPG I-region 1047 1128 IPR006086 GO:0004518
Pste5g02973 1715 Gene3D - 1 149 - -
Pste5g02973 1715 SUPERFAMILY PIN domain-like 2 1128 IPR029060 -
Pste5g02973 1715 MobiDBLite consensus disorder prediction 1603 1715 - -
Pste5g02973 1715 MobiDBLite consensus disorder prediction 1671 1702 - -
Pste5g02973 1715 CDD PIN_XPG_RAD2 1030 1114 - -
Pste5g02973 1715 CDD PIN_XPG_RAD2 2 92 - -
Pste5g02973 1715 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Pste5g02973 1715 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Pste5g02973 1715 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Pste5g02973 1715 MobiDBLite consensus disorder prediction 1196 1213 - -
Pste5g02973 1715 MobiDBLite consensus disorder prediction 1612 1627 - -
Pste5g02973 1715 MobiDBLite consensus disorder prediction 128 160 - -
Pste5g02973 1715 FunFam DNA repair protein UVH3 993 1112 - -
Pste5g02973 1715 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Pste5g02973 1715 MobiDBLite consensus disorder prediction 1428 1463 - -
Pste5g02973 1715 MobiDBLite consensus disorder prediction 482 510 - -
Pste5g02973 1715 MobiDBLite consensus disorder prediction 128 146 - -
Pste5g02973 1715 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1113 1322 IPR036279 -
Pste5g02973 1715 MobiDBLite consensus disorder prediction 1176 1195 - -
Pste5g02973 1715 MobiDBLite consensus disorder prediction 1406 1422 - -
Pste5g02973 1715 MobiDBLite consensus disorder prediction 1168 1213 - -
Pste5g02973 1715 SMART xpgn3 1 98 IPR006085 GO:0004518
Pste5g02973 1715 MobiDBLite consensus disorder prediction 1632 1648 - -
Pste5g02973 1715 MobiDBLite consensus disorder prediction 465 516 - -
Pste5g02973 1715 MobiDBLite consensus disorder prediction 1389 1405 - -
Pste5g02973 1715 Coils Coil 1000 1034 - -
Pste5g02973 1715 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 261 - -
Pste5g02973 1715 SMART HhH_4 1115 1148 IPR008918 GO:0003677|GO:0003824
Pste5g02973 1715 FunFam DNA repair protein UVH3 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02973 Pste-Chr5 22598829 22612796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02973 1038 1145 Core DNA Replication Machinery Family AT5G26680 36.036 1.91e-12 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02973 5 22598829 22612796 Pste5g02973 5 22598829 22612796 ECH