Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02964 ATGGCTCTTACACTTCAGCGTGCATCATCTCAACTACTCATTCTAGTGATTATACTCTCAATATTCCAAGTGACCCCTTCCTTTTCTTTCGAGCATAAAAAGCCTAATCATAAACATTGGAAACATGCAGTGGCCACTTATTATGGACCAAAAAATGGATGTGGAAGTGAAGGTGGAGCTTGTGGATATAAAAGTGCTGTTAAGGAAGCTCCATTCTATTCGTTAGTGTCGGCGGGATCCCCTCTTCTATATCAACAAGGAAAGGGGTGTGGTTCTTGTTATGAGGTGAGAATAATTAACATTTATAATTGGTGGGATCCTGTGAGAGTAGTCATCACTGATGAGTGTGCTGGGTGTGGTTCAGATTCTAAATATCATTTTGATTTGAGTGGCACTTCTTTTGCTTCATTGGCAGCTGTTGGCCAAAAACAAAAACTATTCAAATCAGGAAAAATAAGCATTGTATTTAGAAAAGTTAAATGCCAGTATCCTAAAAGAACAATAGCTTTTGAAGTGGATTCTGGGTCAAACCATTACTATTTTGCTACTTTGGTTAAATTTGTTAATGGGGATGGTGATATTGAAAAGCTTGAAATGAAAACAGATTCAGGGTGGCATTCCATGCAACGTTCATGGGGTGCACTTTGGAAACTTGACAAAGGCATACAACTTAAACCACCATTCTCATTTAAGCTAACCACTAAGGCTGGAAAGACTATTTCTGCCAAAAATGTTATCCCTGCTGGATGGAATGCTGGTAAGACTTACCAGTCATCTGTGAATTTTCATCACCCCAAATAA 801 0.3858 MALTLQRASSQLLILVIILSIFQVTPSFSFEHKKPNHKHWKHAVATYYGPKNGCGSEGGACGYKSAVKEAPFYSLVSAGSPLLYQQGKGCGSCYEVRIINIYNWWDPVRVVITDECAGCGSDSKYHFDLSGTSFASLAAVGQKQKLFKSGKISIVFRKVKCQYPKRTIAFEVDSGSNHYYFATLVKFVNGDGDIEKLEMKTDSGWHSMQRSWGALWKLDKGIQLKPPFSFKLTTKAGKTISAKNVIPAGWNAGKTYQSSVNFHHPK 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02964 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Pste5g02964 266 PANTHER EXPANSIN-B3 19 262 - -
Pste5g02964 266 PRINTS Major pollen allergen Lol pI signature 186 201 IPR005795 GO:0005576|GO:0019953
Pste5g02964 266 PRINTS Major pollen allergen Lol pI signature 234 251 IPR005795 GO:0005576|GO:0019953
Pste5g02964 266 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576|GO:0019953
Pste5g02964 266 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Pste5g02964 266 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Pste5g02964 266 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576|GO:0019953
Pste5g02964 266 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Pste5g02964 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 166 IPR007112 -
Pste5g02964 266 Gene3D - 25 161 IPR036908 -
Pste5g02964 266 Pfam Lytic transglycolase 77 152 IPR009009 -
Pste5g02964 266 Pfam Expansin C-terminal domain 168 247 IPR007117 -
Pste5g02964 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Pste5g02964 266 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Pste5g02964 266 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Pste5g02964 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Pste5g02964 266 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Pste5g02964 266 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Pste5g02964 266 SUPERFAMILY Barwin-like endoglucanases 36 164 IPR036908 -
Pste5g02964 266 Gene3D - 162 259 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02964 Pste-Chr5 22519179 22523411 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02964 28 262 Expansin Gene Family AT1G65680 47.917 4.19e-74 225