Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02953 TTAACAACAATCACTCCTTTCCCCCCCTCACTCTTCTTTATTCTCTTCTCTTCTCTTCAAACACAACACACATCACAACACAACACAGTTAGTTCTTAGTTCTCCCCCAACATGAGCCAGTGTGTTCCAAGCTGGGATGTAGATGACAACCCTCCACCCCCAAGAGTCTCCCTCCGCTCCAACTCCAATTCCACTGCCCCAGATGTTCCCATGTTGGACTATGAAGTAGCGGAGCTTACATGGGAAAACGGGCAACTTTCAATGCATGGATTAGGGTTACCGAGAGTGCCGGTGAAGGCTCCAACGGCGGCGGCGAACAAGTACACATGGGAGAAGCCACGAGCAAGCGGTACCCTGGAGTCGATAGTGAACCAAGCGACGAGCTTCCCGCAGCGGGGGAAGCCGTTGGCGGCAGCCGGAGACGCCACGTACGGGGGCTTCGTGGTGCCGTGGTTCGACCCGCACGGCAGGGGCGCGGCGGCGGCAATGGACGCATTGGTGCCGTGCTCGAACCGGGAGAGCAAGCAAGGGATGGAGGGCGGCACGTGCATGGTGGGGTGCTCCACACGTGTGGGGTCGTGCTGCGGCGGGAACAAGGGGCGCGAGAGGGATCAGAGCGTGAGTGGGAGTGCCACGGACAGCAAGCACGTGACGCTTGACACGTGCGAGAGAGAGTTTGGTGTGGGTTTCACCTCCACGTCGATTAACTCGCTTGAGAACACCAGCTCCGCAAAGCACTGCACCAAGACCACCACCGTAGACGATCACGATTCTGTTTCGCACAGTAAACCCGTGGGGAAAGAGGGCGATGAGGAGAAGAAAAGAAGAGGAAATGGAAAATCATCTGTGTGCACTAAAAGAAGCAGAGCTGCAGCAATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAATACTTGAAGCAGTTGCAAGCACAAGTACAGATGATGAATAGAATCAACATGTCATCCATGATGCTACCATTAACCATGCAGCAACAGCTTCAGATGTCGATGATGTCTCCAATGGGCATGGGATTAGGGATGGGGATGGGGATGGGCATGGGCATGGGGATGGACATGAACTCCATGAATCGTGTTAACATCCCTGCCATCCCTCCGGTTCTCCACCCCTCCGCCTTCATGCCTATGGCTGCCTCGTGGGATGCCGCCGCCTCGGCCGGTGGCGGCGACCGGCTTCAAGGAGCTCCGGCCACCGTGATGCCTGACCCTTTGTCCACATTTTTTGGATGCCAATCACAGCCCATGAGCATGGATGCTTATAGTAGACTTGCAGCCATGTATCAGCAATTGCACCAACCTCCAGCTTCTGGTTCCAAGAACTGAAAGCTAGCTAGTAAGTAAATTCTTGTGTTGTGATAGTATTGAGCTACAAACAAGAATGTCCATACTTATTCTTTGTGAGAAATATGTATATTAGCTCCAAAGCAAGTGATGAGAAAACAATAGTAGAATATTTATATATAGTCCTTTCTTATTATGAGTTAGTGACTTTTAATGTTAGGTGGCTTTCTTGGCTATTTTATTACCTTTCATATCTATGTTCATAGAATTTCCAACATGTATAAGGTGTTTTTCTATTTTATAATTGAATAACGAATTTGGC 1711 0.4991 MSQCVPSWDVDDNPPPPRVSLRSNSNSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKAPTAAANKYTWEKPRASGTLESIVNQATSFPQRGKPLAAAGDATYGGFVVPWFDPHGRGAAAAMDALVPCSNRESKQGMEGGTCMVGCSTRVGSCCGGNKGRERDQSVSGSATDSKHVTLDTCEREFGVGFTSTSINSLENTSSAKHCTKTTTVDDHDSVSHSKPVGKEGDEEKKRRGNGKSSVCTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGMDMNSMNRVNIPAIPPVLHPSAFMPMAASWDAAASAGGGDRLQGAPATVMPDPLSTFFGCQSQPMSMDAYSRLAAMYQQLHQPPASGSKN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02953 439 Coils Coil 258 278 - -
Pste5g02953 439 FunFam transcription factor UNE10 isoform X1 247 312 - -
Pste5g02953 439 MobiDBLite consensus disorder prediction 255 272 - -
Pste5g02953 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 301 IPR011598 GO:0046983
Pste5g02953 439 MobiDBLite consensus disorder prediction 212 242 - -
Pste5g02953 439 SMART finulus 258 307 IPR011598 GO:0046983
Pste5g02953 439 Gene3D - 248 313 IPR036638 GO:0046983
Pste5g02953 439 Pfam Helix-loop-helix DNA-binding domain 257 302 IPR011598 GO:0046983
Pste5g02953 439 CDD bHLH_AtPIF_like 252 313 IPR047265 -
Pste5g02953 439 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 437 IPR031066 -
Pste5g02953 439 MobiDBLite consensus disorder prediction 1 30 - -
Pste5g02953 439 MobiDBLite consensus disorder prediction 211 284 - -
Pste5g02953 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 250 314 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02953 Pste-Chr5 22399359 22407143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02953 1 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 52.093 1.33e-104 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g02953 HLH 6.6e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02953 5 22399359 22407143 Pste5g02953 5 22399359 22407143 ECH
Pste5g02953 5 22399359 22407143 Pste6g00231 6 773707 777824 PCT