Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02943 CTTCTCTCCCCTTTTCCATACCTGTGTTTTTCTTTTCTTTTTATATTAAAAATTAAAAAATATCATTGCTTTTGCTTCCATGCTTATTTCCTCGTCGCATCTGAATATCTCATGCCGAAGACCGTGCGTTGAAATCTAGCAAGGACGAGATCCAAGTAACGTTGTTCTGCCCCAATTTGCGCTCTTCTTACTATCACCAAGGCACAAAATGGACTATAGGTGGACCAATGGTAGGCAGGAAACCGGTGGCCGTGACAGGAGGCAATCCAAAAAGGAACAGGCGTATAACAACTCACTTATTGAGGATTTATCAGAGGATTTTCGTTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGACAACGTGGAACAAGCATCTCTGGACACACAGTTAACATCATCTAATATTGGCTTTAAGCTTCTCCAAAAAATGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAACAAGGAATCATTGAGCCAATAAAATCTGGGATCAGAGATCCAAGACTGGGGGTTGGTAAGCAAGAAGAGGATGATTTCTTCACTGCAGAAGAAAATATCCAGCGAAAAAAACTTGATGTTGAGTTGGAAGAGACAGAGGAACATTTGAAGAAACGGGAGAAGGCAGCATATAGCATATATGCATGCCTTTTGACCGGATTGGTATGTCATAAGGAACCATCAACCTTGGAAGGTCTTGAGAATTTCCTGCAGTTTTTATTACCTGGTGGCTTCTGCCTGCTTCGTGCACATTCTGAAAATTCAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGAAAGAAATCCGAAAGGTGTTTTATTGTGATCTCTGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCGCACTTGAGCTCTTATGATCACAATCACAGAAAGCGTTTCAAACAAATGAAGGAAATGCATGGTAGTAGTAGTCGGGATGATAGGCAAAAGCGAGAACAGCAGCGTCAAGAGAGAGAAATGGCTAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGGCTTCAACTGCAACAAGAGTCTGGATCTGCAACAGTTTCCTCTGAATCTAGAACAGCTACTGCACTTACAGATCAGGAGCAGCGAAATACTTTGAAGTTTGGATTTTCTTCTAAAGGCGGTGCTTCCAAGATTACATTTGGTGCTAAGAAACAAAATGTTGCAAAGAAGCAAAATGTTCCGATCTCCTCTATATTTAGTAACGATAGTGATGAAGAATAATGGTATACGTATGCAGTGATCTGTCAGCGTGATGACATATATCTCCTGCGTGGTTTCGTTTGCATTAGATGTTTTTTTAATTTGATATTTGTCGCCATCCCTCTGTTTAAGAGGAGGAGAACATTTGGTATTCCATAAGTTTGGAGTTTTTGTAGACCAAAACTATTGCCTGCGTTATCTATGTGACGATGTAGTTTGCAAGGATGTCATGTT 1474 0.4064 MDYRWTNGRQETGGRDRRQSKKEQAYNNSLIEDLSEDFRLPINHRPTENVDLDNVEQASLDTQLTSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPRLGVGKQEEDDFFTAEENIQRKKLDVELEETEEHLKKREKAAYSIYACLLTGLVCHKEPSTLEGLENFLQFLLPGGFCLLRAHSENSAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGSSSRDDRQKREQQRQEREMAKFAQIADAQKQQRLQLQQESGSATVSSESRTATALTDQEQRNTLKFGFSSKGGASKITFGAKKQNVAKKQNVPISSIFSNDSDEE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02943 350 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 350 - -
Pste5g02943 350 MobiDBLite consensus disorder prediction 1 26 - -
Pste5g02943 350 Pfam Zinc-finger double-stranded RNA-binding 207 234 IPR022755 -
Pste5g02943 350 Coils Coil 123 143 - -
Pste5g02943 350 MobiDBLite consensus disorder prediction 9 23 - -
Pste5g02943 350 ProSitePatterns Zinc finger C2H2 type domain signature. 209 231 IPR013087 -
Pste5g02943 350 SMART G-patch_5 64 109 IPR000467 GO:0003676
Pste5g02943 350 MobiDBLite consensus disorder prediction 238 263 - -
Pste5g02943 350 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Pste5g02943 350 SUPERFAMILY beta-beta-alpha zinc fingers 205 241 IPR036236 -
Pste5g02943 350 Pfam G-patch domain 67 107 IPR000467 GO:0003676
Pste5g02943 350 MobiDBLite consensus disorder prediction 283 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02943 Pste-Chr5 22250491 22253464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02943 1 350 C2H2 Transcription Factor Family AT5G26610 55.241 2.49e-112 327
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02943 5 22250491 22253464 Pste5g02943 5 22250491 22253464 ECH