Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02941 ATGTTGGATTATGAGTGGGGAAGCCCATCATCCATCATTCTCCCCGAAAATGAAGTCTCCGGTGGCGAGTCCGACCAGACACGCCTCCAAAACTTCGACCACAACTACACCATGTTACCCAACAACATTCTACATGGTTCTACACCAACCACCAATGGTTTCTGTCTTCAAAACCACTTCAACTCACATCATCATTATTATCATCATCATTCAGATCCACACGTGTTTCAAAATGCGTGGAACACTTCTTTCAATCCATCATCATCATTTTCTATGTATTCACTTAATCCAATTTCACCATCACATTTAGAAAATAGTGAAATTGGACATGGACATGAGTCTGGCCTCAGTCTTAACCTTGGAGGTCGCACTTACTTTTCCTCTGGTTCTGACCACACTGTAAACCGATTCTACCACTCCAAAGCGTTAGAATCGGTTGGAGTGTCGTCGAATCTACCTAGGTGTCAGGCCGAGGGATGCAATGCAGACCTCTCCCAGGAAAAACACTACCACCGTCGTCATAAGGTGTGTGAGTTCCACTCCAAGGCCGCCACGGTGGTCGCCGCCGGGTTGACTCAGCGATTCTGCCAACAGTGCAGCAGGTTGTGCTTGTTTTCCGGAAAACTCTACGTAATGACGAATTTGCCACTGGGTGTTGCCATTTGGGGTCAATCATTGGCTTTGGGATTCCAAGTTCTTTCTGAGTTTGACAATGGAAAACGGAGTTGCAGGAAGAGACTGGCAGATCACAACCGTCGCAGAAGGAAAACTCAGCAGCAGCCATCAGCTCAAGAAATTCGCACACACAATGTTTCAAGTACGGTTTCTTATTTGTTGTTTCTCTTTTCTCTTACACTTGATAAACAAGTACACAACATGTTAAATTCTCCTTAA 894 0.4508 MLDYEWGSPSSIILPENEVSGGESDQTRLQNFDHNYTMLPNNILHGSTPTTNGFCLQNHFNSHHHYYHHHSDPHVFQNAWNTSFNPSSSFSMYSLNPISPSHLENSEIGHGHESGLSLNLGGRTYFSSGSDHTVNRFYHSKALESVGVSSNLPRCQAEGCNADLSQEKHYHRRHKVCEFHSKAATVVAAGLTQRFCQQCSRLCLFSGKLYVMTNLPLGVAIWGQSLALGFQVLSEFDNGKRSCRKRLADHNRRRRKTQQQPSAQEIRTHNVSSTVSYLLFLFSLTLDKQVHNMLNSP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02941 297 SUPERFAMILY SBT domain 230 260 IPR036893 GO:0003677|GO:0005634
Pste5g02941 297 SUPERFAMILY SBT domain 153 204 IPR036893 GO:0003677|GO:0005634
Pste5g02941 297 Coils Coil 240 260 - -
Pste5g02941 297 ProSiteProfiles Zinc finger SBP-type profile. 152 257 IPR004333 GO:0003677
Pste5g02941 297 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 100 263 IPR044817 GO:0003677
Pste5g02941 297 Gene3D - 150 244 IPR036893 GO:0003677|GO:0005634
Pste5g02941 297 Pfam SBP domain 155 202 IPR004333 GO:0003677
Pste5g02941 297 Pfam SBP domain 230 256 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02941 Pste-Chr5 22234671 22236551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02941 1 202 SBP-box Gene Family AT1G02065 39.357 1.37e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste5g02941 SBP 4.6e-17 No_clan