LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g02940	TTTCCTCATGGGGCTACTTTAAAGTTTAAACACTTCCTCCATTGTACCAAAACAACAACCCTTTTCTTTCTCTCTCTTTCCTCTTTCACCCCAACACCACAGCATCTTACACAGAAAAAAATCCCTTCCTCTTCTGTTCCTTCCCCTCATCATCACCCTATTTCTAGCTTCTTTCTTCCCTATTTTTCCCCAACACAACATAGTTTGTGTTAACTGTTAAATCTCAACGCACGTTGTTGGATTCACAAGATAGTATACACAAAAGGGTTTCTTTTCTTTCTTCTTTTTTTTCTAGAAGGTGCTTCCATTAATCCAACAAATTATGGACTTTGGAGGGAACACTCCCACCAAGAATAATGGGAGAAATCCTTTTGCTTGGGGTTCATGGCAAACCCCAGCTAATATCAGTACAAGCAATACTGTTAATTACAGTATTGCTGGTTCTGGGTCTGACGCGGAAGTATTTGCAGCGTCACAAATATGTGACGTTGCATTACCTCCGCGTCATCCGTATAGCAGGTCACATCCTGACCCGCACCTGATGTGTTTGAAGCTGGGGAAGAGGCATTACTTTGAGGACGTGAGTGGTGGTTGTTTGGTGTTGGGGGATAAGAGAGGGAAAGGGTGCTCCGGCGGCGGTGGGGCGGCGGTGGCGCGGTGCCAGGTGGAGGGGTGCCACGTGGCGCTGGTGAACGCGAAGGAGTATCACCGGAGGCATAAGGTGTGTGAGATGCATTCCAAGGCTCCAAAGGTTGTGGTGTTGGGAATGGAGCAGAGGTTCTGTCAACAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGATTCGAAGAGGAGTTGTAGAAGAAGATTAGCAGGTCACAACGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTTCAAGAAATTCTTCACAAGGTTTTCCATACTTATCATCAGGAGGGTGTGCTCTCTCTCTTCTGTCATCAAGAAGTGATTCTTGGCTTTCTCCTTCTGATCTCTCCACAAGATGCAGTGCCGCCTTGCGCGAATTGATAGCGGAAAACCGGGCAGCAATCATGGCCAGGCAGTTTGATAGGGATAGAGATTGGCATATTCATCATCACCATGTAGTGGAAGACTTCAAGGAGATGCAACCTCAGTCCAATTACTTCCCACAACAGATGTTTCCCCAGACACAGTGAAGGATCATTCTGTAAAAGGCCTTGTGAGATCTTAATGCATGTTAGGGAAACAACAAGAATTCAAAGTGTGCACATT	1259	0.4575	MDFGGNTPTKNNGRNPFAWGSWQTPANISTSNTVNYSIAGSGSDAEVFAASQICDVALPPRHPYSRSHPDPHLMCLKLGKRHYFEDVSGGCLVLGDKRGKGCSGGGGAAVARCQVEGCHVALVNAKEYHRRHKVCEMHSKAPKVVVLGMEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVSRNSSQGFPYLSSGGCALSLLSSRSDSWLSPSDLSTRCSAALRELIAENRAAIMARQFDRDRDWHIHHHHVVEDFKEMQPQSNYFPQQMFPQTQ	286

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g02940	286	SUPERFAMILY	SBT domain	111	192	IPR036893	GO:0003677\|GO:0005634
	Pste5g02940	286	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	70	223	IPR044817	GO:0003677
	Pste5g02940	286	Gene3D	-	104	174	IPR036893	GO:0003677\|GO:0005634
	Pste5g02940	286	ProSiteProfiles	Zinc finger SBP-type profile.	110	187	IPR004333	GO:0003677
	Pste5g02940	286	Pfam	SBP domain	113	186	IPR004333	GO:0003677
	Pste5g02940	286	MobiDBLite	consensus disorder prediction	177	198	-	-
	Pste5g02940	286	FunFam	Squamosa promoter-binding-like protein 14	105	174	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g02940	Pste-Chr5	22203462	22207952	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g02940	74	186	SBP-box Gene Family	AT1G27370	55.118	1.63e-38	137

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Pste5g02940		SBP	8.4e-32	No_clan

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