Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02940 TTTCCTCATGGGGCTACTTTAAAGTTTAAACACTTCCTCCATTGTACCAAAACAACAACCCTTTTCTTTCTCTCTCTTTCCTCTTTCACCCCAACACCACAGCATCTTACACAGAAAAAAATCCCTTCCTCTTCTGTTCCTTCCCCTCATCATCACCCTATTTCTAGCTTCTTTCTTCCCTATTTTTCCCCAACACAACATAGTTTGTGTTAACTGTTAAATCTCAACGCACGTTGTTGGATTCACAAGATAGTATACACAAAAGGGTTTCTTTTCTTTCTTCTTTTTTTTCTAGAAGGTGCTTCCATTAATCCAACAAATTATGGACTTTGGAGGGAACACTCCCACCAAGAATAATGGGAGAAATCCTTTTGCTTGGGGTTCATGGCAAACCCCAGCTAATATCAGTACAAGCAATACTGTTAATTACAGTATTGCTGGTTCTGGGTCTGACGCGGAAGTATTTGCAGCGTCACAAATATGTGACGTTGCATTACCTCCGCGTCATCCGTATAGCAGGTCACATCCTGACCCGCACCTGATGTGTTTGAAGCTGGGGAAGAGGCATTACTTTGAGGACGTGAGTGGTGGTTGTTTGGTGTTGGGGGATAAGAGAGGGAAAGGGTGCTCCGGCGGCGGTGGGGCGGCGGTGGCGCGGTGCCAGGTGGAGGGGTGCCACGTGGCGCTGGTGAACGCGAAGGAGTATCACCGGAGGCATAAGGTGTGTGAGATGCATTCCAAGGCTCCAAAGGTTGTGGTGTTGGGAATGGAGCAGAGGTTCTGTCAACAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGATTCGAAGAGGAGTTGTAGAAGAAGATTAGCAGGTCACAACGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTTCAAGAAATTCTTCACAAGGTTTTCCATACTTATCATCAGGAGGGTGTGCTCTCTCTCTTCTGTCATCAAGAAGTGATTCTTGGCTTTCTCCTTCTGATCTCTCCACAAGATGCAGTGCCGCCTTGCGCGAATTGATAGCGGAAAACCGGGCAGCAATCATGGCCAGGCAGTTTGATAGGGATAGAGATTGGCATATTCATCATCACCATGTAGTGGAAGACTTCAAGGAGATGCAACCTCAGTCCAATTACTTCCCACAACAGATGTTTCCCCAGACACAGTGAAGGATCATTCTGTAAAAGGCCTTGTGAGATCTTAATGCATGTTAGGGAAACAACAAGAATTCAAAGTGTGCACATT 1259 0.4575 MDFGGNTPTKNNGRNPFAWGSWQTPANISTSNTVNYSIAGSGSDAEVFAASQICDVALPPRHPYSRSHPDPHLMCLKLGKRHYFEDVSGGCLVLGDKRGKGCSGGGGAAVARCQVEGCHVALVNAKEYHRRHKVCEMHSKAPKVVVLGMEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVSRNSSQGFPYLSSGGCALSLLSSRSDSWLSPSDLSTRCSAALRELIAENRAAIMARQFDRDRDWHIHHHHVVEDFKEMQPQSNYFPQQMFPQTQ 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02940 286 SUPERFAMILY SBT domain 111 192 IPR036893 GO:0003677|GO:0005634
Pste5g02940 286 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 70 223 IPR044817 GO:0003677
Pste5g02940 286 Gene3D - 104 174 IPR036893 GO:0003677|GO:0005634
Pste5g02940 286 ProSiteProfiles Zinc finger SBP-type profile. 110 187 IPR004333 GO:0003677
Pste5g02940 286 Pfam SBP domain 113 186 IPR004333 GO:0003677
Pste5g02940 286 MobiDBLite consensus disorder prediction 177 198 - -
Pste5g02940 286 FunFam Squamosa promoter-binding-like protein 14 105 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02940 Pste-Chr5 22203462 22207952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02940 74 186 SBP-box Gene Family AT1G27370 55.118 1.63e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste5g02940 SBP 8.4e-32 No_clan