Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02937 ATGCCTCTGCATGAGTTATACCCTGGTTTGGGAAAAGGGCCAGATTTTTCAGTGCAGGGTCAGTCCAGTAAAGCTCGAATGAGCCCAAATTGTAAAGCTTTGTCATCTCACTGCTTACCATCACACAGTCCAGTAGGATATGCTAATAATAATAATAATAATAATGTTACCATCACAAGGATGGGCAAGTGTGGGAACTTAGGTGCTGAAATTAGAAGGCTGGTCCCTTCAGATGAAGTGGATTTAAGCGAAGAAGAGGAAGACATGGTGATGCCTTGGGTGAATTTTGGAATGGATGACTCTTTGCAATATGAATATAGTTCTGATTTTTTCCATGAACTATCTGGGGTCACCATGAATGAGCTCTCAGTTTCACATAATTTTTCTATGCTAGATAGAGGAAACAATTGTAATAAGGTATTTAGGGACACTCATAAACACACTCCATTTGCATCTGTTAGTTCCAGGGTAGCAGATAAAGCAGAACGTAATGCAAATAACATTCCATTTCCTTCAAGTGATTTCTCCAGCTTAAAAATTGGGAGGCAAGGGCCCTCTATGTGTAGCAGTAGTTCCACCATGATGAATTTTTCCCATTTTGCAAAACCTGCTGCTATGGTCAAAGCTAATCTTCAGAACATTGGCTTGGCATCAAGATCAGCAAGTGTGGGAATGAAGTTAAAAGGTGCTGCTGCAACTGAAACCAATCCTGCTGAATCAATAAAAGTTGAATTAAGTGGAGAGTGTCCAAAGAAACTGGCCATACACAATCAGGATCAGGATGGCGCAGTTTCTACAAAGTGTGACCGTTCTTGCAAAGATGTGTCCAAAATTGATCAAAATCAAACTTCAAATCTTGTTGTTGGTGAAAGTAGGAATAAAGGACAAGAAGCTGTTGAAAAAGGCGTGGAGCCAGCTGTGGTCTCTTCATCTGTTTGCTCTGGCAATGGTGCACAAAGGGGTTCAGAAGATCCAAATCAAAATTTGAAGCGAAAATATAGTGACACCGAGGATTTTGAGTGCCAAAGTGAGGATGTTGAGGAAGAATCAGTTGGTGTTAAAAAGCAGGTTCCTGCACGACGAATTGGAGCCAAGAGAAGCCGTTCAGCTGAAGTGCATAATCTATCAGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTAATACCAAATTGCAATAAGGCGGATAAAGCTTCAATGTTGGATGAGGCGATAGAGTATCTCAAAACACTTCAACTCCAACTTCAAATTATGTCTATGGGAAGCGGTTTATATATGCCTGGAATGATGTTACCTGGGGGAATGCATGCACCACTTATGGGTCCATTTTCACCTATAGGTGTTGGCATGCAAATGAGATTAGGAATGGGCATGCCTGATGCGAATGATGAGTCTTCTAGATTTGCAATGTCTTTGGGCAGTCATCCCATGCCAATTACACATGCTCATATCTTTTCTTTTCCAGGAGAACCTTTTATGAACCCATCAACTTTAGGAATAAATTCCTGTGGATCAGGACTTACGGAAACTATCTTAAAGGATCCAATGTCACATGTGAAGTCACTAGTTGTACAAAACACCAATGGTTGTAATTCAACAAATCAGATATCAACACAG 1635 0.4073 MPLHELYPGLGKGPDFSVQGQSSKARMSPNCKALSSHCLPSHSPVGYANNNNNNNVTITRMGKCGNLGAEIRRLVPSDEVDLSEEEEDMVMPWVNFGMDDSLQYEYSSDFFHELSGVTMNELSVSHNFSMLDRGNNCNKVFRDTHKHTPFASVSSRVADKAERNANNIPFPSSDFSSLKIGRQGPSMCSSSSTMMNFSHFAKPAAMVKANLQNIGLASRSASVGMKLKGAAATETNPAESIKVELSGECPKKLAIHNQDQDGAVSTKCDRSCKDVSKIDQNQTSNLVVGESRNKGQEAVEKGVEPAVVSSSVCSGNGAQRGSEDPNQNLKRKYSDTEDFECQSEDVEEESVGVKKQVPARRIGAKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKADKASMLDEAIEYLKTLQLQLQIMSMGSGLYMPGMMLPGGMHAPLMGPFSPIGVGMQMRLGMGMPDANDESSRFAMSLGSHPMPITHAHIFSFPGEPFMNPSTLGINSCGSGLTETILKDPMSHVKSLVVQNTNGCNSTNQISTQ 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02937 545 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 366 428 IPR036638 GO:0046983
Pste5g02937 545 MobiDBLite consensus disorder prediction 309 324 - -
Pste5g02937 545 SMART finulus 374 423 IPR011598 GO:0046983
Pste5g02937 545 MobiDBLite consensus disorder prediction 283 337 - -
Pste5g02937 545 PANTHER TRANSCRIPTION FACTOR PIF3 17 528 IPR044273 GO:0003700|GO:0006355
Pste5g02937 545 MobiDBLite consensus disorder prediction 364 378 - -
Pste5g02937 545 FunFam Basic helix-loop-helix transcription factor 363 426 - -
Pste5g02937 545 Gene3D - 363 425 IPR036638 GO:0046983
Pste5g02937 545 MobiDBLite consensus disorder prediction 1 24 - -
Pste5g02937 545 Pfam Helix-loop-helix DNA-binding domain 372 418 IPR011598 GO:0046983
Pste5g02937 545 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 368 417 IPR011598 GO:0046983
Pste5g02937 545 MobiDBLite consensus disorder prediction 357 378 - -
Pste5g02937 545 CDD bHLH_AtPIF_like 368 430 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02937 Pste-Chr5 22131177 22134665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02937 70 444 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 40.000 4.23e-61 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g02937 HLH 9.5e-14 No_clan