LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g02937	ATGCCTCTGCATGAGTTATACCCTGGTTTGGGAAAAGGGCCAGATTTTTCAGTGCAGGGTCAGTCCAGTAAAGCTCGAATGAGCCCAAATTGTAAAGCTTTGTCATCTCACTGCTTACCATCACACAGTCCAGTAGGATATGCTAATAATAATAATAATAATAATGTTACCATCACAAGGATGGGCAAGTGTGGGAACTTAGGTGCTGAAATTAGAAGGCTGGTCCCTTCAGATGAAGTGGATTTAAGCGAAGAAGAGGAAGACATGGTGATGCCTTGGGTGAATTTTGGAATGGATGACTCTTTGCAATATGAATATAGTTCTGATTTTTTCCATGAACTATCTGGGGTCACCATGAATGAGCTCTCAGTTTCACATAATTTTTCTATGCTAGATAGAGGAAACAATTGTAATAAGGTATTTAGGGACACTCATAAACACACTCCATTTGCATCTGTTAGTTCCAGGGTAGCAGATAAAGCAGAACGTAATGCAAATAACATTCCATTTCCTTCAAGTGATTTCTCCAGCTTAAAAATTGGGAGGCAAGGGCCCTCTATGTGTAGCAGTAGTTCCACCATGATGAATTTTTCCCATTTTGCAAAACCTGCTGCTATGGTCAAAGCTAATCTTCAGAACATTGGCTTGGCATCAAGATCAGCAAGTGTGGGAATGAAGTTAAAAGGTGCTGCTGCAACTGAAACCAATCCTGCTGAATCAATAAAAGTTGAATTAAGTGGAGAGTGTCCAAAGAAACTGGCCATACACAATCAGGATCAGGATGGCGCAGTTTCTACAAAGTGTGACCGTTCTTGCAAAGATGTGTCCAAAATTGATCAAAATCAAACTTCAAATCTTGTTGTTGGTGAAAGTAGGAATAAAGGACAAGAAGCTGTTGAAAAAGGCGTGGAGCCAGCTGTGGTCTCTTCATCTGTTTGCTCTGGCAATGGTGCACAAAGGGGTTCAGAAGATCCAAATCAAAATTTGAAGCGAAAATATAGTGACACCGAGGATTTTGAGTGCCAAAGTGAGGATGTTGAGGAAGAATCAGTTGGTGTTAAAAAGCAGGTTCCTGCACGACGAATTGGAGCCAAGAGAAGCCGTTCAGCTGAAGTGCATAATCTATCAGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTAATACCAAATTGCAATAAGGCGGATAAAGCTTCAATGTTGGATGAGGCGATAGAGTATCTCAAAACACTTCAACTCCAACTTCAAATTATGTCTATGGGAAGCGGTTTATATATGCCTGGAATGATGTTACCTGGGGGAATGCATGCACCACTTATGGGTCCATTTTCACCTATAGGTGTTGGCATGCAAATGAGATTAGGAATGGGCATGCCTGATGCGAATGATGAGTCTTCTAGATTTGCAATGTCTTTGGGCAGTCATCCCATGCCAATTACACATGCTCATATCTTTTCTTTTCCAGGAGAACCTTTTATGAACCCATCAACTTTAGGAATAAATTCCTGTGGATCAGGACTTACGGAAACTATCTTAAAGGATCCAATGTCACATGTGAAGTCACTAGTTGTACAAAACACCAATGGTTGTAATTCAACAAATCAGATATCAACACAG	1635	0.4073	MPLHELYPGLGKGPDFSVQGQSSKARMSPNCKALSSHCLPSHSPVGYANNNNNNNVTITRMGKCGNLGAEIRRLVPSDEVDLSEEEEDMVMPWVNFGMDDSLQYEYSSDFFHELSGVTMNELSVSHNFSMLDRGNNCNKVFRDTHKHTPFASVSSRVADKAERNANNIPFPSSDFSSLKIGRQGPSMCSSSSTMMNFSHFAKPAAMVKANLQNIGLASRSASVGMKLKGAAATETNPAESIKVELSGECPKKLAIHNQDQDGAVSTKCDRSCKDVSKIDQNQTSNLVVGESRNKGQEAVEKGVEPAVVSSSVCSGNGAQRGSEDPNQNLKRKYSDTEDFECQSEDVEEESVGVKKQVPARRIGAKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKADKASMLDEAIEYLKTLQLQLQIMSMGSGLYMPGMMLPGGMHAPLMGPFSPIGVGMQMRLGMGMPDANDESSRFAMSLGSHPMPITHAHIFSFPGEPFMNPSTLGINSCGSGLTETILKDPMSHVKSLVVQNTNGCNSTNQISTQ	545

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g02937	545	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	366	428	IPR036638	GO:0046983
	Pste5g02937	545	MobiDBLite	consensus disorder prediction	309	324	-	-
	Pste5g02937	545	SMART	finulus	374	423	IPR011598	GO:0046983
	Pste5g02937	545	MobiDBLite	consensus disorder prediction	283	337	-	-
	Pste5g02937	545	PANTHER	TRANSCRIPTION FACTOR PIF3	17	528	IPR044273	GO:0003700\|GO:0006355
	Pste5g02937	545	MobiDBLite	consensus disorder prediction	364	378	-	-
	Pste5g02937	545	FunFam	Basic helix-loop-helix transcription factor	363	426	-	-
	Pste5g02937	545	Gene3D	-	363	425	IPR036638	GO:0046983
	Pste5g02937	545	MobiDBLite	consensus disorder prediction	1	24	-	-
	Pste5g02937	545	Pfam	Helix-loop-helix DNA-binding domain	372	418	IPR011598	GO:0046983

Showing 1 to 10 of 13 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g02937	Pste-Chr5	22131177	22134665	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g02937	70	444	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G09530	40.000	4.23e-61	208

Showing 1 to 1 of 1 entries

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Pste5g02937		HLH	9.5e-14	No_clan

Showing 1 to 1 of 1 entries