Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02929 GGTATTGCAAAAAAAAAAAAAATCCTTTCCAAAAGGTTCTCCATTTCCTTCCCTCGCAAGTGGCAACTTCCTTCGTTCAAAAAGCTTCCCCAAACCGCACCGAGTCACCGATTCGTCCCCACTCACTCGGTCAAACTCAGTCTCAACATCGACGCCATGAGCCTGAGCTACGAACAGAGGCTTCAGGCTGTTGCCAAACTCATTCTCAACGATGACGCCGCACGCGCCGGCGACGCGCCGCCGTGTGAGGAGGAGCTTGGGCTCAGGGCAACCCTCAAACCGCACCAGGTGGAAGGGGTCTCGTGGCTCATTCGGAGGTTCAAACTCGGCGTCAACGTTGTTCTCGATGGGACTGGGCAAGACTTTGCAGGCTATCTCCTTTTTAAGCTATTTAAAATGGTTATATGTCCTCTAAGTGTGACAGATGGTTGGTTGTCAGAGATAGTCAAATTTACCCCTAAACTAGAAGTCTTCAAATATGTTGGTGATAAAGAATACAGGCGCAATCTACGCATGAAAATTCACAAACATGTAACAGGGCAGTCATCAACATTGAACGTCATGTTGCCTTTTGATGTGCTGTTAACATCATATGACATTGCACTGATGGATCAGGATTTTCTTTCACAAATACCATGGCAGTATGCAATCATTGATGAAGCTCAGAGACTTAAAAATCCATCAAGTGTTTTATTTAATGTTCTCAAAGACCGTTATATAATGCCAAGACGGTTGTTGATGACTGGCACACCTATTCAAAACAACCTTTCTGAACTTTGGGCGTTGATGAGTTTCTGCATGCCTTCTGTCTTTGGTACACTGGATCAGTTCCTTTCTACGTTTAAGGACATTGGTGATCTTTCCTCAGTTCATGATGCTCCAAAGGTAAAGGAGAGACTTAAACTTCTGAGAAGCATATTGGGATCCTTTATGCTTCGACGCACCAAGTCAAAGCTTATTGAATGTGGAAATTTAGTGCTGCCACCTCTCACTGAAACAACTGTGTTAGTACCCCTTGTCATCCTGCAGAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCATAAGCTACTTGCACTATCTTCTGGAACTTCAAATCATCAGTCACTACAGAATATTCTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATCGAGCCTGAACCTTACGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTGCTTATTCTGGACCAACTTCTTCAGAAGTTACATTATTCTGGACACCGTGTTCTCCTTTTTGCTCAGATGACCCATACACTTGACATTTTGCAAGATTTTATGGAGTTGCGGAAGTATTCATATGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCTATAAGAAGTTTCAGTAGCTCTTCAGCTAATATAGGCTTGAATTCTGAAGCTGATGAAAATGGAGCATTTGTTTTTATGATATCTACAAGAGCAGGCGGAGTTGGTTTGAATCTTGTGGCTGCTGATACTGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGTCAGATGAACCACGTGTTGTGTATAAACCTTGTTACAGAGCGGACAGTGGAGGAAGTAATTATGCGGAGGGCAGAGAGAAAATTGCTGCTGAGCCTCAATGTTATGGGTGATAACATTCTCAAAGATGATGATGAAGAACCATCTGAAGTTGGAACTGGTGATTTGAAATCCATCATATTTGGGTTGCATCTGTTTGACCCCACTGAGATGAATGATGGAAGTCATAGGGATATGAACATACCAGAAATTAGTGCTATGGCTGACAGGGTGCTTGCTATGCGTGATGAACAAATTCTTGATAAGGATGAAAGGAAATTTGAGGTCAATCCAAGGAGCATCGAAAAAGGGGATGATGTTAAGGAAGGAGGTTGTGCTTTTCTATCTTGTGATCTTGGTCTTGATGAGGCTTCATATCTTTCCTGGGTTAAAAAATTTGAGGAAGTGTCTAAATCAAGTTGTGAGTCAATCATGGAGTTGAGGAGCAGAAGAAACTTAGATGAGGAAAAGAGTGTGAAACTTGAGTCTGCTAGAAAGAAGGCTGAGGAAAAGAAGCTATCTAGGTGGGAAGCTCTTGGATATCAATCATTGAATGTAAAAGATGCTGTGTGCCCAACAGACAATGACACCACATCAGCTACTGGGTCTGTTCATTTTGTCTATGGTGATTGTACTGCTCCATCAAATGATTGTTCTTCTGAACCTGCTATAATTTTCAGCTGCGTTGACACCTCTGGACATTGGGGCCGTGGTGGGATGTTTGATGCACTGTCCAAACTTTCTACAAGCATTGGTGATGCATATGAACGGGCTTCTGAACATGGGGACCTGCATCTTGGTGATCTGCATCTTGTAAGGCTTGATGATGGTTGTGATGAACAACACATAAATGGAAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAGTCTTATAACCCAAGACGCAAAATCCCTCGCAGTGAAATCTCACTTCCCCACTTGGAAAGCTGCTTGTCAAAGGCTGCGTTCTCAGCTGCTCAAAATTCTGCATCAATACACATGCCACGAATTGGTTATCAAGATGGATCTGATCGTTCTGAGTGGTACACCATTGAGCGGCTCCTGAGAAAATATGCTTCCATTTACAACATAAATATATATATATTATTATCGAAGATCACGTTAAGGCTCCAGCTTACTTAATTTCCTAGACTCCAAGTATAGTTCTGGCGAGAAAACTATTAAAGAGGTGCTGTTTTAGCAATTTAGCAAGTGGTTCTGTATGGATCCATGTTTGTAAATAACAAAAACAGTTTATACAATTGACACAAGTTTAGTATA 2874 0.4231 GIAKKKKILSKRFSISFPRKWQLPSFKKLPQTAPSHRFVPTHSVKLSLNIDAMSLSYEQRLQAVAKLILNDDAARAGDAPPCEEELGLRATLKPHQVEGVSWLIRRFKLGVNVVLDGTGQDFAGYLLFKLFKMVICPLSVTDGWLSEIVKFTPKLEVFKYVGDKEYRRNLRMKIHKHVTGQSSTLNVMLPFDVLLTSYDIALMDQDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMSFCMPSVFGTLDQFLSTFKDIGDLSSVHDAPKVKERLKLLRSILGSFMLRRTKSKLIECGNLVLPPLTETTVLVPLVILQKKVYMSILRKELHKLLALSSGTSNHQSLQNILRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTHTLDILQDFMELRKYSYERLDGSIRAEERFAAIRSFSSSSANIGLNSEADENGAFVFMISTRAGGVGLNLVAADTVDKQALQRAHRIGQMNHVLCINLVTERTVEEVIMRRAERKLLLSLNVMGDNILKDDDEEPSEVGTGDLKSIIFGLHLFDPTEMNDGSHRDMNIPEISAMADRVLAMRDEQILDKDERKFEVNPRSIEKGDDVKEGGCAFLSCDLGLDEASYLSWVKKFEEVSKSSCESIMELRSRRNLDEEKSVKLESARKKAEEKKLSRWEALGYQSLNVKDAVCPTDNDTTSATGSVHFVYGDCTAPSNDCSSEPAIIFSCVDTSGHWGRGGMFDALSKLSTSIGDAYERASEHGDLHLGDLHLVRLDDGCDEQHINGNAPKMVALAVVQSYNPRRKIPRSEISLPHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSEWYTIERLLRKYASIYNINIYILLSKITLRLQLT 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02929 911 SUPERFAMILY Macro domain-like 734 899 IPR043472 -
Pste5g02929 911 Gene3D - 72 324 IPR038718 -
Pste5g02929 911 CDD SF2_C_SNF 397 529 - -
Pste5g02929 911 Coils Coil 681 701 - -
Pste5g02929 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 314 IPR027417 -
Pste5g02929 911 Pfam Helicase conserved C-terminal domain 405 506 IPR001650 -
Pste5g02929 911 Gene3D Leucine Aminopeptidase, subunit E, domain 1 730 900 IPR043472 -
Pste5g02929 911 Gene3D - 325 627 IPR027417 -
Pste5g02929 911 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 408 569 IPR001650 -
Pste5g02929 911 FunFam Putative helicase CHR10 325 636 - -
Pste5g02929 911 Pfam SNF2-related domain 133 384 IPR000330 GO:0005524|GO:0140658
Pste5g02929 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 561 IPR027417 -
Pste5g02929 911 SMART helicmild6 434 518 IPR001650 -
Pste5g02929 911 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 269 IPR014001 -
Pste5g02929 911 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 84 625 IPR031053 GO:0003678|GO:0006281|GO:0006338
Pste5g02929 911 CDD Macro_Poa1p-like_SNF2 733 893 - -
Pste5g02929 911 SMART ultradead3 88 277 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02929 Pste-Chr5 22041184 22054498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02929 403 545 RAD5 or RAD16-like Gene Family AT5G22750 32.468 3.96e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste5g02929 SNF2_N 2.5e-37 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02929 5 22041184 22054498 Pste5g02929 5 22041184 22054498 ECH