Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02923 GCAAGAGAGAAAAGAAAACACTGCACAGAACTGAGAGAGAGAGAGACGCAATCACTCACTGAGATTGAAACCCTAGGGTTTGTGTTTGTGTGTGTGGTTTCAATGGGGAGTATGAGTGATTCAGACAGAAAACGACGTCACTTTAGCTCCCTCTCCCCTACACCTCCTGCCGCTACTGCCAAGAAGCTACCCTTCTTGCCCGTTTCCGAAGACAAAAAGCTTGACATTGTTGTACTTCAGTATCAAAATCAAAAGCTTACACAAAAATTAGAAACTCAGAAGTTAGAGTATACAGCTCTTGAGAATAGGTTTTCTCAGCTGAAGGAGAGGCAAAAGTCCTATCATTCCACTTTAGCAGCGGTCAAGAAGTCTTGGGAGCAGCTGGTTGATGATTTGGAGTTGGGTTCTGCACGTATGAGAGAGTCAAGCAGCAAATCCAATTCTATATTTGAATCAATCATGGGAGATGGTAGTCCATCTACAGCTCAGGATGTGTTTCTTAGCCGACTAATGCAAACTGGTGCAACTGAATGTGCATCTACATATAATTTTGGAAACCAGATGGAGGAGCATGCAGAAATTAATACTGAAAAAGCTAAAAGTATATTAAAAAATATATCGACTGCTGTTAATAACCTTTGGGTTCTTATGGATGGATTGCATACTGAATTGCTGAAAAAACTTCCTGGAGATGTTTTGTGTAGGCAGGAATTGTCCTCTGATCTTGAGGTGAAAGTTAAAAACTTGAGATTAGAATTCAGTGAACTTCATTTAAAGCACATGTCTTTAGCAAGTGAGTACCAAATTCAGAGAGATTTGGATGCCAAACATAAAGCTGAGCTCAAAAGATTAAAAGGGGAACTGGCAAGCACGATTGCAGAGTTAGAAGAAAGCAATCACAAACTTGCAACTCTTAAGGCAGAGAAAGATGCAGCAAAAGGAGCAGTTCTCCCAGTCTTAAATGTTGGCAGTGCACACATTTCTAGTGATATGATAAGAGACAATCAAAAGGAATTGCAAGATATGGAATCCACTTTGAAGCATCTATTGGAGCAAGGGTCAACACGATTAACAGAACTGAAAAGTCTTCATGAGGAAAGAATACGAATATTACAACAGTTGTGTGATCTACAGAACACTTTGAAGAATTTGAAGTGTATTACTTCCTCCCAAGCTTTTCAATTGGTTAAAGATGAAATACAAAAATCGAAATCAGAAGTTCGGGAGTATCAAGCCTTATATGAGAAACTACAGGTTGAGAAGGATAATCTTGCTTGGAGGGAGAGGGAGTGGTACATTAAAAATGATTTAGCAGATGTTTATCAAAGATCTCTGGAAGTTTCAGATTTTAGAGCCGCAGAAATACGCGCTGAGATACAAAAAAAGATAGAGGAAAGAGTGGTGATTGAAAATAAGCTAAGAGAGGAAGCAAGAGAGCCAGGAAGGAAACAAATTATTGCTGAATTTAGATCTCTAGTTTCTTCATTTCCTGAGGAAATGGGGTCTATGCAAAGCCAATTACGAAAATATAAAGAATCAGCTTCAGATATCCATTCCCTGCGTGCAAATGTGCAGTCTCTTTCTAGTATTCTTGACAGGAAGGTAAAAGAATGTGATGTATTTTCTCTTAGGTCTGCGGATCAACTTGCTGAGATCAAGAGACTGCATGGTGTGGTACAAGATTTGAGAGAGAGTGAGAGAGATTTGAAGTTGATATTGGAAATGTTTAGACGTGAGTCCATTGATTCAAGGACTGTTATGGATGCACGAGAAGCAGAATACAGAGCATGGGCACATGTTCAAAGTTTGAAATCATCTCTTGATGAGCACAGCTTAGAACTTCGAGTTAAGATGGCCAATGAAGCAGAGGCCAGATCTCAACAAAAGTTGGCTGCTGCTGAAGCTGAAATAGTGGACATGAGACAGAAATTAGAAGATTCTAAAAGGAAAATGTGTGATCTGTCTGATGTCTTGAAATCTAAGAACAAACAAAATGAAAACTACTTATCTGAAATAGAGAGTATTGGACAAGCATATGATGACATGCAAACTCAAAACCAACATCTTTTGCAGCAGATTACTGAACGAGATGATTACAATATTAAGCTTGTTTTGGAGGGTGTAAGGGCAAGACAGAAGCAGGATTCTTTGCTCATAGAGAAGCGGGTAATTGAACAAGAGGTCCAGCAAGCAAACATATCCCTGAATTTATATGATATGAAAGCTGCAAGAATTGAAGACCAGTTGAAATTTTGTTCAGATCAGCTTCAAAAGCTTGCAGAGGATAAGCTTCAAAGTTCTGTCACTTTGGAAAATACACAAAAAAGGCTGTCTGATATTAGAAGACAATCACAACAGGTTAGGGATACGGTGGTAGAAATGCAATCTAAAATTGGTAGTAATCGAGTGACGCGAATGGAGTTACAAGTGGAACTTGAGAAAGAAAGGTTTGCCAAGAAAAGAGTAGAGGAGGATCTGGAGATTGCTAGGAGAAAGTTTTCACGCCTTAAAGAACAGAATGAGAGCTCTTCATTAACTGAAAGGCTTCAGCAGGAACTTGAAGAGTACAGGGAAATTATCAAGTGCAGTATCTGCCAAGACAGGGCTAAACAGGTGGTAATTACAAAATGCTTCCACTTGTTCTGCTACTCATGTATCCAGAAAGTTGCTGGGAGTAGGCGTCGCAAGTGTCCTCAGTGTGCTACAAGCTTTGGGCCTAATGATATTAAGTCTGTTTATATAAACTTGGTTCTTTCCCGGTTCTTGAGAAAAGGCATGTGTTCTTTTGAAAAAGATCTGAAAGAAGTTTGGAGCCATAGGAAACGTGATATTTGTTCTTTGCAGATTTATCATAATACATCTTCCAATGCGATTTGGAGAGGTCATGAAGTGGTTGATCAATTTTTGTTTGTAAAAGCATGTAATTTGTGTAATCCTAGCTCATTTGCAAATCCTCTCACTATTGATGTAGTTGTATTTGAAATTGATATCAACATGCTTTTATTGAAA 3009 0.3882 AREKRKHCTELRERETQSLTEIETLGFVFVCVVSMGSMSDSDRKRRHFSSLSPTPPAATAKKLPFLPVSEDKKLDIVVLQYQNQKLTQKLETQKLEYTALENRFSQLKERQKSYHSTLAAVKKSWEQLVDDLELGSARMRESSSKSNSIFESIMGDGSPSTAQDVFLSRLMQTGATECASTYNFGNQMEEHAEINTEKAKSILKNISTAVNNLWVLMDGLHTELLKKLPGDVLCRQELSSDLEVKVKNLRLEFSELHLKHMSLASEYQIQRDLDAKHKAELKRLKGELASTIAELEESNHKLATLKAEKDAAKGAVLPVLNVGSAHISSDMIRDNQKELQDMESTLKHLLEQGSTRLTELKSLHEERIRILQQLCDLQNTLKNLKCITSSQAFQLVKDEIQKSKSEVREYQALYEKLQVEKDNLAWREREWYIKNDLADVYQRSLEVSDFRAAEIRAEIQKKIEERVVIENKLREEAREPGRKQIIAEFRSLVSSFPEEMGSMQSQLRKYKESASDIHSLRANVQSLSSILDRKVKECDVFSLRSADQLAEIKRLHGVVQDLRESERDLKLILEMFRRESIDSRTVMDAREAEYRAWAHVQSLKSSLDEHSLELRVKMANEAEARSQQKLAAAEAEIVDMRQKLEDSKRKMCDLSDVLKSKNKQNENYLSEIESIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLLIEKRVIEQEVQQANISLNLYDMKAARIEDQLKFCSDQLQKLAEDKLQSSVTLENTQKRLSDIRRQSQQVRDTVVEMQSKIGSNRVTRMELQVELEKERFAKKRVEEDLEIARRKFSRLKEQNESSSLTERLQQELEEYREIIKCSICQDRAKQVVITKCFHLFCYSCIQKVAGSRRRKCPQCATSFGPNDIKSVYINLVLSRFLRKGMCSFEKDLKEVWSHRKRDICSLQIYHNTSSNAIWRGHEVVDQFLFVKACNLCNPSSFANPLTIDVVVFEIDINMLLLK 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02923 1003 Coils Coil 278 315 - -
Pste5g02923 1003 ProSitePatterns Zinc finger RING-type signature. 877 886 IPR017907 -
Pste5g02923 1003 Coils Coil 616 650 - -
Pste5g02923 1003 Coils Coil 83 110 - -
Pste5g02923 1003 ProSiteProfiles Zinc finger RING-type profile. 862 900 IPR001841 -
Pste5g02923 1003 PANTHER RING FINGER PROTEIN-RELATED 35 914 IPR013956 GO:0004842|GO:0010390
Pste5g02923 1003 Coils Coil 332 352 - -
Pste5g02923 1003 Coils Coil 400 427 - -
Pste5g02923 1003 Coils Coil 452 479 - -
Pste5g02923 1003 SUPERFAMILY RING/U-box 854 913 - -
Pste5g02923 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 843 915 IPR013083 -
Pste5g02923 1003 SMART ring_2 862 900 IPR001841 -
Pste5g02923 1003 Coils Coil 805 839 - -
Pste5g02923 1003 Coils Coil 742 762 - -
Pste5g02923 1003 CDD RING-HC_Bre1-like 854 912 - -
Pste5g02923 1003 Coils Coil 770 790 - -
Pste5g02923 1003 Pfam Zinc finger, C3HC4 type (RING finger) 861 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02923 Pste-Chr5 21971281 21995212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02923 859 913 C3H Transcription Factor Family AT2G42030 33.929 5.40e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02923 5 21971281 21995212 Pste5g02923 5 21971281 21995212 ECH