Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02914 ATGGCTTCTATCATAGGGGTTTCCTCCATTTACCAAGCCCCCACACTCGAACTATACCAGAGGCCAAACACTGCCTCTGCCCCCTCCGTTAGGTTCCAATGTTTGGACGCCAAGTCCCAGTCCCAGTCCCACTTCAACAGCCTCCTCCGAGCCCACCGCAACACCACTGGGCCGGGCCTGAAGCCCACACACACTTTCGTTCCCTCCGCCGTGGCGACGCCTAATTCCTCACTCCTCAGCGAAGAAGCCTTCCAGGGACTCGCTCGCGACTTGGACCAAACCCACGACGACAACGACTTTAGCCACGTGGACCCCGACGAACTGGATATTTCGAAGCTCGACTTGCCTTCTCGCCTCGTTGAAACTCTTCACAGCCGTGGGATTACTCACCTTTTCCCCATTCAGAGAGCCGTCTTGGTCCCTGCTCTACAAGGTAGAGATATCATTGCTCGAGCCAAGACCGGTACTGGAAAGACATTAGCCTTCGGAATTCCACTTATCAAAGGCCTCACTGAAGACGAACACGCACCTTCTCACCGGAGGTCTGGTAGGCTTCCGAGAGTTTTGGTGCTTGCGCCTACGAGGGAGTTAGCGAAGCAAGTGGAGAAAGAGATCAAGGAATCTGCGCCTTATCTGAACACTGTTTGTGTTTATGGGGGTGTTTCTTATGTTACTCAGCAGAGTGCGCTTTCGCGCGGTGTTGATGTCGTGGTTGGCACACCTGGGAGAATAATTGACTTGATCAATGGCAACAGCCTTAAGCTGAGTGAGGTTCAGTATCTCGTCCTTGATGAAGCGGACCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTTATTTTGGAGAATCTCCCCTCTCAGAGGCAGAGCATGCTTTTCTCTGCAACCATGCCTGGTTGGGTTAAGAAGTTGGCAAGAAAATACTTGGACAACCCTCTCACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGTATAAAACTTTATGCTATAGCAGCTACTGCCACTTCAAAGAGGACAATTCTTTCTGATCTTGTAACTGTGTATGCAAAGGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGACGCTGATGAAGTATCATTGGCATTAACAAATAGTATAATGTCTGAAGCACTGCACGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCCGGCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATACCCAATGTTGATTTGGTGAGTTCAAAGGATGCTTTGCAGTATACATTTAATAATCTGATCTCTGATGTTGGTTCTATAATTCATTATGAGCTTCCCAACGATCCTGAGACTTTTGTACATCGCTCTGGTCGTACTGGGCGTGCTGGAAAACAAGGTACTGCCATTCTGTTGTACACCAGTAGCCAGAGGAGAACAGTTAGATCACTTGAACGTGATGTAGGCTGCAAGTTTGAATTTACTAGTCCACCAGCTATGGGAGAGGTTTTGGAGTCGTCTGCTGAGCAGGTTGTTGCTACACTTAATGGAGTTCATCCCGAGTCTGTTCAGTTTTTTACCCCAACAGCACAAAAACTGATTGACGAACAAGGAACAAGTGCCCTTGCTGCTGCACTTGCTCAACTGAGTGGATTTTCCCGACCTCCATCATCCCGGTCTCTTATCACCCACGAACAGGGATGGATTACATTGCAATTAACACGAGATTCAGATAATAGAAAATATTTTTCAGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTGCAGCTGCAGATGAAGTTGGAAAAATCCATTTAATTGCAGATGAAAGGGTTCAAGGAGCTGTTTTTGATCTTCCTGAGGAGATTGCTAAAGAGTTACTTAATAGGGATATACCACCTGGAAACACCATTTCCAAGATCACCAAGCTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAGGTTCTCAGACAGAGACCGAAGTAACCGAAGAGGTTCTAGTTCTAGGGGAGGTTTTAGTTCGAGGGGAGGTTCTTCTAGGGACCGGAGAGGTTTTAAATCCTCGCGAGGATGGGATGGCGAAGACTCTGATGATGACGACTTTGGTGATCGATCTAGGAGAGGTGGTAGAAATTTTAAAACTGGCAATAGCTGGTCTCGAGCAGCAGGTAAAAGTAGCGGGGATGATTGGTTAATTGGAGGTAGACGATCAAGCAGGCCTTCATCATCAGACAGAGGTGGCTTTGGAGGGGCTTGTTTTAATTGCGGGGAATCTGGGCATCGTGCATCAGATTGTCCAAACACTTCAAACAGGCGAGGCTTTTTCTAAGTTCCCACATATTTAGTTTTGGGCACCACTTTGTCCTGAACGTGAGCTGCTGTCACTGTTGTTGGCCTAATGGGTTCTGGAAAATTGACAGATGCTCTTTCCAAAAGAGTTACAGAATCAATATTAATTTGCTCTCACGTGTTGGGGTGATCTCCATAGGGACTTCTGTTTTTCGTCCTGAGTCTCCATGAAATTTAGTATTTGTTTTGGGCAGTAGTATTGGATAAAAATAGTGTTAACAGTATGGTTCTGTATCTTATTTTTGGGGTGAGTTGGGGGATTCTATGGTCCTGTATTCTACTTATAATGTTATTTAACATCTTTTTGAACCTTCCTGGCTTAGGAGCAGACAGGCAAAATGAATGAAAGATTAAAATCCCAAAGGCTTATGCACAAGATGC 2768 0.4592 MASIIGVSSIYQAPTLELYQRPNTASAPSVRFQCLDAKSQSQSHFNSLLRAHRNTTGPGLKPTHTFVPSAVATPNSSLLSEEAFQGLARDLDQTHDDNDFSHVDPDELDISKLDLPSRLVETLHSRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPLIKGLTEDEHAPSHRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILENLPSQRQSMLFSATMPGWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLALTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVSSKDALQYTFNNLISDVGSIIHYELPNDPETFVHRSGRTGRAGKQGTAILLYTSSQRRTVRSLERDVGCKFEFTSPPAMGEVLESSAEQVVATLNGVHPESVQFFTPTAQKLIDEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWITLQLTRDSDNRKYFSARSVTGFLSDVYSAAADEVGKIHLIADERVQGAVFDLPEEIAKELLNRDIPPGNTISKITKLPPLQDDGPPSDFYGRFSDRDRSNRRGSSSRGGFSSRGGSSRDRRGFKSSRGWDGEDSDDDDFGDRSRRGGRNFKTGNSWSRAAGKSSGDDWLIGGRRSSRPSSSDRGGFGGACFNCGESGHRASDCPNTSNRRGFF 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02914 788 Pfam Helicase conserved C-terminal domain 343 428 IPR001650 -
Pste5g02914 788 Gene3D - 109 320 IPR027417 -
Pste5g02914 788 SMART c2hcfinal6 764 780 IPR001878 GO:0003676|GO:0008270
Pste5g02914 788 Pfam DEAD/DEAH box helicase 132 305 IPR011545 GO:0003676|GO:0005524
Pste5g02914 788 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 316 IPR014001 -
Pste5g02914 788 Pfam GUCT (NUC152) domain 557 656 IPR012562 GO:0003723|GO:0004386|GO:0005524
Pste5g02914 788 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 510 IPR001650 -
Pste5g02914 788 MobiDBLite consensus disorder prediction 639 788 - -
Pste5g02914 788 MobiDBLite consensus disorder prediction 774 788 - -
Pste5g02914 788 SUPERFAMILY Retrovirus zinc finger-like domains 745 784 IPR036875 GO:0003676|GO:0008270
Pste5g02914 788 Gene3D - 334 546 IPR027417 -
Pste5g02914 788 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 441 706 - -
Pste5g02914 788 ProSiteProfiles Zinc finger CCHC-type profile. 765 780 IPR001878 GO:0003676|GO:0008270
Pste5g02914 788 FunFam ATP-dependent RNA helicase RhlE 97 319 - -
Pste5g02914 788 Pfam Zinc knuckle 764 780 IPR001878 GO:0003676|GO:0008270
Pste5g02914 788 SMART helicmild6 370 470 IPR001650 -
Pste5g02914 788 CDD SF2_C_DEAD 330 479 - -
Pste5g02914 788 SMART ultradead3 127 333 IPR014001 -
Pste5g02914 788 MobiDBLite consensus disorder prediction 692 706 - -
Pste5g02914 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 491 IPR027417 -
Pste5g02914 788 MobiDBLite consensus disorder prediction 664 678 - -
Pste5g02914 788 Gene3D - 735 786 - -
Pste5g02914 788 CDD GUCT_Hera 564 643 - -
Pste5g02914 788 CDD DEADc 119 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02914 Pste-Chr5 21850104 21855582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02914 68 492 Eukaryotic Initiation Factors Gene Family AT1G72730 34.101 2.64e-61 211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02914 5 21850104 21855582 Pste4g01388 4 10312376 10318305 ECH
Pste5g02914 5 21850104 21855582 Pste5g02914 5 21850104 21855582 ECH
Pste5g02914 5 21850104 21855582 Pste4g01388 4 10312376 10318305 PCT