Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02910 GACACTCTGTTTTCCCTAAACCCTAACTGTAAGACTCAGCAGCTGCTGTGTTCTTCGATCCAAGAGCTTCAACAATGGTGTACGTGAAGGCTCAGAAATCGAAAGCCTACTTCAAGCGGTACCAAGTCAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGTGCTAGGATTCGGTTGATTAATCAGGACAAGAACAAATACAACACTCCGAAGTACCGATTTGTCGTTCGATTTACCAACAAGGATATCATTGCACAAATAATATCTGCTACCATTGCTGGTGATATTGTTCTTGCTGCGGCATATGCACATGAGCTGCCACAATATGGTCTTGAAGTAGGGCTAACAAACTATGCAGCAGCTTATTGCACTGGGCTACTGTTGGCCCGAAGAGTCCTCAAAACTCTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGGCTACTGGAGAGGATTATTCAGTAGAACCTTCTGAGAGCCGCAGGCCGTTCCGTGCCCTCCTTGATGTTGGTCTCATCAGGACTACAACTGGAAATCGTGTCTTCGGTGCGCTTAAGGGAGCTCTTGATGGAGGTTTAGATATTCCTCACAGTGACAAGAGGTTTGCTGGGTTTGATAAAGAGAAAAAGGATCTTGATGCTGATGTTCATCGCAAATATGTTTTTGGTGGACATATCCTGGCAGAAGATGAACCTGAGAAATATCAGACACACTTCAGTGAATATATCAAGCGTGGAATAGAAGCTGATGGTATTGAGGCGCTGTACAAAAAGGTTCATGCTGCCATCCGAGCCGATCCTTCTCTTAAGAAATCTGCTAAGCAACCACCTAAGGAACACAAGAGGTACAACTTGAAGAAACTTACTTATGAGGAGAGGAAGGCCAAATTGGTTGCACGCCTGAATGCTCTAAACTCTGCTGCTGATGAGGATGATGATGAGTGAAAGTTGATTCAAGATTCTGTGTCATTGCTGCACAGATAGAAACTATCTTATTTAGCGTCAAGAGAATCACTTTCTTAAAATTTATTTGCCTGTTTTTATTTTCTAGGTGGAAAATTTTGGATACTTTTTTGGATTTGAGCAAGGCTTATTTTTGGTCTCAACTTCGTGTTAGCCTGAATTGATGTTTTACTTTATTTTTATGATTCACTTAAGCAATGTTCGAATACTTTTTAAGTGTGATCCTAACGTGTGATTCTCTGGTAAATGGGAATATATGGCATTGGTTGCCCCTATTAACATTAATTTATGCATTTCTAGAGTATAGATAAGGCAACGCCCTATCAAAAGAAATGTTAAATTGGAATTTACTAAAACGAAG 1329 0.4078 MVYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIISATIAGDIVLAAAYAHELPQYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATGEDYSVEPSESRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKDLDADVHRKYVFGGHILAEDEPEKYQTHFSEYIKRGIEADGIEALYKKVHAAIRADPSLKKSAKQPPKEHKRYNLKKLTYEERKAKLVARLNALNSAADEDDDE 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02910 291 CDD Ribosomal_L18_L5e 41 170 - -
Pste5g02910 291 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pste5g02910 291 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pste5g02910 291 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pste5g02910 291 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pste5g02910 291 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pste5g02910 291 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pste5g02910 291 Hamap 50S ribosomal protein L18 [rplR]. 14 240 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pste5g02910 291 Gene3D - 1 285 - -
Pste5g02910 291 Pfam Ribosomal L18 C-terminal region 229 282 IPR025607 -
Pste5g02910 291 FunFam 60S ribosomal protein L5 1 285 - -
Pste5g02910 291 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 284 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pste5g02910 291 SUPERFAMILY Translational machinery components 11 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02910 Pste-Chr5 21802945 21806046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02910 1 285 Cytoplasmic Ribosomal Protein Gene Family AT3G25520 81.443 4.12e-179 494