Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02900 AAAGAGAGAATGGAAAAGTTGATTTTAAGTGGTATTATATTGTTTGCGGTGTTATTGAGTACAGAAGTTGGAGTAGCATCCGGTGTTTGGCTGCGAGCTCATGCAACTTTCTACGGTGGGAGTGATGGCTCAGGAACAATGGGAGGTGCATGTGGGTATGGAAATCTGTACAGAGATGGTTATGGGACAAAAACAGCAGCGTTAAGTAGTGTTTTGTTTGATGATGGCAAGTCATGTGGAGGTTGCTATAGGATAGTTTGCGACGCAAGGCAAGTGCCCAAATGGTGCCTTAGGGGGACTTCCATCGTTGTTACTGCCACAAATTTCTGCCCTCCAAACTACGCACTCCCTAATGACAATGGTGGTTGGTGTAATCCTCCAAGACCACACTTTGACATGTCTCAACCTGCCTTTGAAACAATAGCCAAGTACAAAGCTGGAATTGTGCCAATTTTGTACAGAAAAGTGGGGTGCAAAAGAGATGGAGGCATGAGATTTACCATAAACGGGAGAGACTATTTCGAATTGGTGCTTATAAGCAACGTAGGTGGAGGTGGAGTGATATCCCGAGTTTGGGTGAAAGGGTCGAGAATGAGTAATTGGGAAAGCATGGCAAGGAATTGGGGTGCTAACTGGCAGAGCTTAAAATATCTGAATGGTCAGAGCTTGTCTTTCAGAGTTCAACTCCGCAATGGGAGGATTCGCACTGCATATAACGTAGCACCCTCCAATTGGAGATTTGCCCAGTCTTTCACCACCAATGTTCAGTTCTGA 774 0.4509 KERMEKLILSGIILFAVLLSTEVGVASGVWLRAHATFYGGSDGSGTMGGACGYGNLYRDGYGTKTAALSSVLFDDGKSCGGCYRIVCDARQVPKWCLRGTSIVVTATNFCPPNYALPNDNGGWCNPPRPHFDMSQPAFETIAKYKAGIVPILYRKVGCKRDGGMRFTINGRDYFELVLISNVGGGGVISRVWVKGSRMSNWESMARNWGANWQSLKYLNGQSLSFRVQLRNGRIRTAYNVAPSNWRFAQSFTTNVQF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02900 257 FunFam Expansin 20 159 - -
Pste5g02900 257 PANTHER EXPANSIN-A15 15 253 IPR002963 GO:0009664
Pste5g02900 257 Gene3D - 164 257 IPR036749 -
Pste5g02900 257 Gene3D - 19 159 IPR036908 -
Pste5g02900 257 SMART dpbb_1 65 153 IPR007112 -
Pste5g02900 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Pste5g02900 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Pste5g02900 257 CDD DPBB_EXPA_N 30 158 - -
Pste5g02900 257 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Pste5g02900 257 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Pste5g02900 257 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Pste5g02900 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Pste5g02900 257 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Pste5g02900 257 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Pste5g02900 257 Pfam Lytic transglycolase 65 153 IPR009009 -
Pste5g02900 257 Pfam Expansin C-terminal domain 164 242 IPR007117 -
Pste5g02900 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Pste5g02900 257 SUPERFAMILY Barwin-like endoglucanases 29 181 IPR036908 -
Pste5g02900 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Pste5g02900 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Pste5g02900 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Pste5g02900 257 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Pste5g02900 257 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Pste5g02900 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Pste5g02900 257 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Pste5g02900 257 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Pste5g02900 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02900 Pste-Chr5 21709456 21710391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02900 13 257 Expansin Gene Family AT4G01630 72.653 9.03e-142 396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02900 5 21709456 21710391 Pste5g02900 5 21709456 21710391 ECH
Pste5g02900 5 21709456 21710391 Pste4g01393 4 10401709 10402772 PCT