Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02888 ATGCTTCTTAACCTTCCAAACGGTGCAGAATGGAAAGTAAATTTGGAGAAGCGTGATGGCAGTATTTGGTTTCAAGATGGTTGGAAAGAGTTTATGGAGTATCACTCCCTAACACATGGTCACCTATTAGTTTTCAAATACAATGGAACTTTCCATTTTGATGTATTCATTTGCGATATGACAGCCACTGAAATAGATTATCCTATCAACAAAACAAATAAAAAAAGACTCAGAATCAATAGTGAAGAAATTCAACCAAGTAAGAGTCAGAAAACAAATGAAAATCATAGGGAAAGGAATAGTTACAATCTGCAGCACACTAGCTCTCGTCGAGGCAGAGATCACAAAGGCATGATTCTAGATTCCTTTATCTGTAGGTTCAAGAACCTAAATGAAATGACAAACATTGATGCTGATGCGAACCTTTCATTCACATTGAAAATAAAACCAAGCCACTTACTCAAGCAATATGTGTATCTGGCGAAGAACCCATTGAAAAGTTACATGAAAGGTGGAGGACAATTTGTTACACTTTTGGTTGGAGACAGATCATGGAGAGTTAAATTAATCAATTATCCAGATAAATCAGTAAGTTACTTTACTTCACAATGGTCAACTTTTGCAAGGGAAAACCATTTGCAAGATGGAGATGCTTGCATGTTCCAACTCCTAAATAGTAGTGATCACTTGGTGATGAAGGTTTTCATTTGTAGAAGGGGAACTCCTCTTCCACGCCATAAGAAAGCAATATCCTAG 756 0.3677 MLLNLPNGAEWKVNLEKRDGSIWFQDGWKEFMEYHSLTHGHLLVFKYNGTFHFDVFICDMTATEIDYPINKTNKKRLRINSEEIQPSKSQKTNENHRERNSYNLQHTSSRRGRDHKGMILDSFICRFKNLNEMTNIDADANLSFTLKIKPSHLLKQYVYLAKNPLKSYMKGGGQFVTLLVGDRSWRVKLINYPDKSVSYFTSQWSTFARENHLQDGDACMFQLLNSSDHLVMKVFICRRGTPLPRHKKAIS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02888 251 CDD B3_DNA 143 235 IPR003340 GO:0003677
Pste5g02888 251 CDD B3_DNA 6 59 IPR003340 GO:0003677
Pste5g02888 251 PANTHER B3 DOMAIN-CONTAINING 3 226 - -
Pste5g02888 251 MobiDBLite consensus disorder prediction 80 112 - -
Pste5g02888 251 MobiDBLite consensus disorder prediction 89 112 - -
Pste5g02888 251 Gene3D - 1 62 IPR015300 -
Pste5g02888 251 Gene3D - 126 240 IPR015300 -
Pste5g02888 251 SUPERFAMILY DNA-binding pseudobarrel domain 2 59 IPR015300 -
Pste5g02888 251 SUPERFAMILY DNA-binding pseudobarrel domain 140 234 IPR015300 -
Pste5g02888 251 SMART B3_2 144 240 IPR003340 GO:0003677
Pste5g02888 251 ProSiteProfiles B3 DNA-binding domain profile. 143 240 IPR003340 GO:0003677
Pste5g02888 251 ProSiteProfiles B3 DNA-binding domain profile. 1 61 IPR003340 GO:0003677
Pste5g02888 251 Pfam B3 DNA binding domain 147 239 IPR003340 GO:0003677
Pste5g02888 251 Pfam B3 DNA binding domain 3 56 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02888 1 67 B3 DNA Binding Superfamily AT3G18990 44.776 1.59e-16 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste5g02888 B3 5.4e-12 CL0405