Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02880 AAAATTTATTTCGCTGAGTACTAGGAATTAAATTCAGAAATGACTTGTATGCCATCCCTCATGGACTACTATTTATTACCAACTCCTCTTAGTAGAGCCATACATCCCAATATTTCACGCTTTCGTACACAGCCACTGCCATCCATTATTTGACTACTACTTTGCGTCAAGCTTCAACAATCCACCTGCTTCAATTCTCCTCTTATTAATAATTCCTGCGCCCACAGTGCCATCACAGACCACAAAGGGAACACCATTTATTTATATACATATATATATAAACAACTTGGTTAGCTTATTAGCAGCAAGGCAAGGCAAGGAAGCTTAATTTGTTTCATTCCATCCAATGATTCATAAGATGCTTGATTCCACCCGCTCCGGTATGACAAGAACCTTCTCCCATGTACCCTCCATTTATGACAATGATTTCCTTGAGCTGGTGTGGGAAAATGGTGAGGTGGTTGTACGGGGAGGTTCATCGAATAGATCAACAAATACTAATCACGACGAAAGAATATATGAAGATGCCGGCATTACAAAAACAAGGTTAAACCCATTTGACTCACTTGAAGCTCACTTCGCCCCTCAAAGGGGGGACTCTGACATGAGCTCTTCACATCAAAGCTGTGCCCAAGATTCGTCTCAATCTTCCCAAAACAAGAATTCCAGCAAGCTTGATGAACAATTCGCAAACCTATTAAGACCAGTAAAAGACTCTAAGCCCAACAATAGTCACTGCTTACCTTCTTCATCTCCGCTCAAGAAACAAAGATCAGATTCAACCCAAACACCACCTGCGACAAACACACGGAACTTGGGATGCGAATGCCATCATAAAACTACAAAATCCAACTTCTACAACTTTTCAATACCTGCAGTGTTTGTCAAATCTACTACTCATCAGGGAAACAGTGCAACTCAGCAGACAAAACAGCATTCATCTCTGGCAAGAGTGGAGGAGATTGAAGCGCTCAAGGTTGAGAAATCATCACAGGGATTTCAAAACCAGACATCCTTAACTGTTGAAAGAAGCGAAAGGCCACCCCCACCGGTTGATGAGCACTCTCAAGCTATTGGACTTCACACATCCCAAGCTCCACTACGTTCTGACCAAAACCCTCGCTCAGAACCGCTTAGAACCAAACCAAAAGCTTATAATAATACTGACATGTGTCATGAACCGTTGCTAGCATCTTCTTCTGTGTGCTCGCTTGGAGCATCTAACGATCCAAACCTTAGTATCAGGAAACACGAGGACACTGATGACTCAACGTATTTAAGTGATGTAAGTGGAACCCTAGACTACGTTTTTGCCTTCTTTAGCCCTTCTTACCATTCTAAGGAACCCGGATTTGTTCGATGCAGAATGAGGGAGAGCCTGAAGATATGGTCAAGCAAGAAAGGGAGGGTAGCAGAGTCAAGAGAAGCAGGAATGCTGAGGTTCATAACTTATCCGAACAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGCAATAAGGTGGACAAAGCATCAATGCTTGACGATGCCATTGACTATCTTAAGACTCTAAAGCTTCAGTTACAGATTATGTCAATGGGAAATGGGTTATGGCCATATATGATGTTACCAGCTGCTGCGGCGCACCATATGAATGGAGCACATTTACCTCAGTTAGTGGGAGCTGGAATGGGATTCAGGCCACCACAGCTTCCTATTCCACCCCTCTCTGCAATCACAGACAACAGACTTCAGATGTTTGGTTTCCCCAACCAAATAGCACCCATTTCAATGCCTCATGCACCTTTCTTCCCTATCATTGGAAATTCTGCCACACAACCACACTTGGCTAGCACCACAGTAGCCACTGCCAACTTGGCAGAACATTTGGCTAATTCTGCTTCATCACTGCAGATCTCAGTCCCGAACAACATGAACCCACTTGAACATACAACAAAACAAGCACCTAATCAGGTTTCCTTTCAACACCACATCAATAGTAATCCGTCAGCTACCCCTTTCATTTTTCCACAAAAGTAGAGGAATGTAGATTAGATGTTAATTAAAGGCGAGTGTAAAGTTCGTTTCCCCTTTTCAGAAAAATCGTATATATTTTCTGGACATAGAATACTAGCTGCAGATTCTGACATCTCATAGTTTCGTGCTTTCAGCCTTATCTGCTTCGATGTACAGATGAAAATTATCTAAAGCAAAATAAATTAGTTATTATTGCG 2240 0.4214 MQNEGEPEDMVKQEREGSRVKRSRNAEVHNLSEQKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIMSMGNGLWPYMMLPAAAAHHMNGAHLPQLVGAGMGFRPPQLPIPPLSAITDNRLQMFGFPNQIAPISMPHAPFFPIIGNSATQPHLASTTVATANLAEHLANSASSLQISVPNNMNPLEHTTKQAPNQVSFQHHINSNPSATPFIFPQK 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02880 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 22 91 IPR036638 GO:0046983
Pste5g02880 228 Gene3D - 20 82 IPR036638 GO:0046983
Pste5g02880 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 24 73 IPR011598 GO:0046983
Pste5g02880 228 FunFam Basic helix-loop-helix transcription factor 19 82 - -
Pste5g02880 228 Pfam Helix-loop-helix DNA-binding domain 28 73 IPR011598 GO:0046983
Pste5g02880 228 CDD bHLH_AtPIF_like 24 86 IPR047265 -
Pste5g02880 228 MobiDBLite consensus disorder prediction 1 39 - -
Pste5g02880 228 PANTHER TRANSCRIPTION FACTOR PIF3 3 204 IPR044273 GO:0003700|GO:0006355
Pste5g02880 228 SMART finulus 30 79 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02880 Pste-Chr5 21481654 21484455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02880 15 99 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 64.368 2.56e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g02880 HLH 2.8e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02880 5 21481654 21484455 Pste4g01410 4 10560678 10562792 PCT