Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02878 ATGTACGTGGTTTTGTTTGCGTTGTGCTTAATGTGCTTAATACAGGTGGATTCTGAAAGATCTGGTAGGGGGGTGCCATTTGTTGAAGGGAACACCTTACAATTTGATGGGGCTATGTTCAATGAATCTGGTGGTGATTCAGAGGCAGTTTGGTCTCACAATAATGGCACTGTTTGGGATCTTATTCCTAACATAAAACAAAGCCTGTATCCCCATCAACAAGAAGGATTTGAGTTTATCTGGACTAATTTGGCAGGAACCACTGACCTTGCCAAGTTAAAGAGGGTTGATCCACAGAGTGAAGGTGGGTGTATTATTTCTCATGCTCCTGGGACTGGCAAGACAAGGTTGACAATGGTGTTTCTTCAGACGTATTTGCAATTGTTTCCAAAGTGTCTACCTATTATTATTGCTCCTGCCAACATCTTGCTTACTTGGGAAGATGAGTTAAGGAAGTGGAATGTAGGAATTCCATTCCATAACTTGAACAATGCTGAACTAACAGGAAAAGAGCAAGACCTTAGGGAAGTTGACTGGTCTGGCAATCAAAGGCAGAATAAGGATGCAATTAGAATGATGAAATTGTGTTCTTGGTACAAAGAGAAGAGCATTCTGTTAATCAGCTACAATTTGTATGAGAGGTTAGCTGGAGCCACATCTGAAGGTGATGAGGAAAAAGAGAAGAACAATAAAAAGATGAAAAGGAGGAAACGTGCAAGGACAAGGGAGTACATTGAATGTGGAATGGGAAAGGTTCTGCGTGACTGTCCTGGTTTGCTAGTTCTTGATGAAGGGCACACTCCTCGGAATCAGAATAGTTATATTTGGAAGGTTCTTTCTGAAAGTAGAACTCAGAAGCGAATCCTTCTTTCGGGTACTCCTTTCCAGAACAACTTCTTGGAACTTTACAATATTTTGTGCTTAATGAAACCGTCCTTTCCTGACAGCATACCACATGAACTCAAGAAGTTTTGCCAAAGTAGACTAAGGCAGGGAAGGAAAGCCTCAAAAGGTTTCAGTTGGGAACCTGTTTGTTCTGGAAATCTCACTGATGAGAAAATAAACCAGCTAAAATTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGTGTCCTTCAGAAGAAACTTCCAGGGTTGAGAGATTGTTTGCTGGTTTTGAAGCCAGACAGTCTTCAGCAAGAAACTCTAGACAGAATTGATCGTTCTCAAAACATTCTTAACTTTGAACATAAGTTGGCTTTGGTCTCAGTGCATCCATCCCTTTTCCTCAAGTGCTCTCTGACAAAAAAGGAAGAATCAATTGTTGACAAGGGTAAGTTGGAAAGGCTTAGATTGGACCCTTATTTAGGGGTTAAAACCAAATTTCTGATCGAGTTTGTACGACTATGTGATGCTGTTAATGAGAAAGTCCTCATTTTCAGCCAATTCATTGATACATTATCCTTGATTAAGGACCAACTTCAATCAACCTTCAATTGGTCTGAGGGGACAGAAGTGTTGTACATGTATGGTAAGCTTGACCAAAAGCAAAAACAGTCTCTTATTCATAATTTCAATGATACAAATAGCCAAGCAAAGGTGTTGCTTGCTACTATAAAAGCATCTTCTGAAGGAATTAACTTAATTGGAGCTTCAAGGGTCGTGCTTCTTGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTGCCGAGCATATAGACTTGGACAAAGGAAGGTTGTTTTCACTTATCATCTACTTGCACAAGACACCCCTGAATGCTCAAAATACTGTAAACAAGCAGAAAAGAACCGGTTATCTGAACTTGTTTTCTCAAGTAGAAATGCTGAACGTGATAGGCTCAAGAGTACAGTAACGTTTGAGGATAAGGTTCTTGATCTGATGATTCAGCATGAAAACTTGAAGGATATGTTTTCGGAATGTCGGGTTCAGCCGAGGGAGTGA 1950 0.4031 MYVVLFALCLMCLIQVDSERSGRGVPFVEGNTLQFDGAMFNESGGDSEAVWSHNNGTVWDLIPNIKQSLYPHQQEGFEFIWTNLAGTTDLAKLKRVDPQSEGGCIISHAPGTGKTRLTMVFLQTYLQLFPKCLPIIIAPANILLTWEDELRKWNVGIPFHNLNNAELTGKEQDLREVDWSGNQRQNKDAIRMMKLCSWYKEKSILLISYNLYERLAGATSEGDEEKEKNNKKMKRRKRARTREYIECGMGKVLRDCPGLLVLDEGHTPRNQNSYIWKVLSESRTQKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPHELKKFCQSRLRQGRKASKGFSWEPVCSGNLTDEKINQLKLLMNPFVHVHKGSVLQKKLPGLRDCLLVLKPDSLQQETLDRIDRSQNILNFEHKLALVSVHPSLFLKCSLTKKEESIVDKGKLERLRLDPYLGVKTKFLIEFVRLCDAVNEKVLIFSQFIDTLSLIKDQLQSTFNWSEGTEVLYMYGKLDQKQKQSLIHNFNDTNSQAKVLLATIKASSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQRKVVFTYHLLAQDTPECSKYCKQAEKNRLSELVFSSRNAERDRLKSTVTFEDKVLDLMIQHENLKDMFSECRVQPRE 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02878 649 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 95 312 IPR014001 -
Pste5g02878 649 Pfam SNF2-related domain 78 406 IPR000330 GO:0005524|GO:0140658
Pste5g02878 649 SMART helicmild6 486 571 IPR001650 -
Pste5g02878 649 Gene3D - 380 646 IPR027417 -
Pste5g02878 649 SMART ultradead3 65 320 IPR014001 -
Pste5g02878 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 614 IPR027417 -
Pste5g02878 649 CDD SF2_C_SNF 428 582 - -
Pste5g02878 649 Gene3D - 47 343 IPR038718 -
Pste5g02878 649 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 459 627 IPR001650 -
Pste5g02878 649 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 32 649 IPR044567 GO:0080188
Pste5g02878 649 Pfam Helicase conserved C-terminal domain 463 571 IPR001650 -
Pste5g02878 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 333 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02878 Pste-Chr5 21466995 21468944 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02878 469 617 RAD5 or RAD16-like Gene Family AT5G43530 36.913 1.20e-19 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste5g02878 SNF2_N 1e-20 CL0023