Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02877 ATGGGCAAACCCGCTAGTTCCTCCTCTTCTTCTATCAGCAGCAGCACCAACCATCATCATCATCATCATCATCTTCTCATTTCAACAGCTTCCTCTCTCACACAAGATCTTCCCACTGATCTTAGGCTTGGACTCGCCCTCTCCGCCACTCAACATGCCGCTTCTGCTATTTCAAGGGAGCAATGGCAACACCCTCTTGTTACCAATCCACAAGCTCCTGAATTCAATGATTGCAATGATCATTCCAGCTTCTTTGTCAAGGTCTACATGGAGGGCATTCCAATCGGAAGAAAACTCAACATTCTAGCTCATGGAAGCTACTATGAGTTGCCAAATAACACTTTTTTCTTAACAGGGGGAACAGAGATGAATGGAGTGCAACCGGAGAGATGCCATGTGCTAACTTATGAAGATGAAGAGGGGGATTTGGTCATGGTCGGAGATGTCCCTTGGGAGATGTTCTTATCCACGGTTAAGAGGTTGAAGATCACAAGGGTAGACACATTCGGCTGTTAA 516 0.4593 MGKPASSSSSSISSSTNHHHHHHHLLISTASSLTQDLPTDLRLGLALSATQHAASAISREQWQHPLVTNPQAPEFNDCNDHSSFFVKVYMEGIPIGRKLNILAHGSYYELPNNTFFLTGGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02877 171 MobiDBLite consensus disorder prediction 1 15 - -
Pste5g02877 171 Pfam AUX/IAA family 77 111 IPR033389 -
Pste5g02877 171 Pfam AUX/IAA family 132 165 IPR033389 -
Pste5g02877 171 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 166 IPR003311 GO:0005634|GO:0006355
Pste5g02877 171 SUPERFAMILY CAD & PB1 domains 77 163 - -
Pste5g02877 171 MobiDBLite consensus disorder prediction 1 23 - -
Pste5g02877 171 Gene3D - 77 170 - -
Pste5g02877 171 ProSiteProfiles PB1 domain profile. 83 168 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02877 Pste-Chr5 21458961 21459738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02877 55 163 B3 DNA Binding Superfamily AT4G23980 32.432 1.83e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pste5g02877 AUX_IAA 9.9e-23 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02877 5 21458961 21459738 Pste4g01415 4 10591119 10592223 PCT